Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0274
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12410.1 68418.m01459 THUMP domain-containing protein contain...    30   1.3  
At4g16640.1 68417.m02515 matrix metalloproteinase, putative meta...    28   5.1  
At1g10020.1 68414.m01130 expressed protein                             28   5.1  
At3g55950.1 68416.m06217 protein kinase family protein contains ...    28   6.7  
At2g19390.1 68415.m02262 expressed protein                             27   8.9  
At1g61990.1 68414.m06992 mitochondrial transcription termination...    27   8.9  

>At5g12410.1 68418.m01459 THUMP domain-containing protein contains
           Pfam profile PF02926: THUMP domain
          Length = 376

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +2

Query: 560 ESFVEELQQLQGAFVYPGLRGQPVHMKVT 646
           +SF EEL Q   + V PGL G P++ KVT
Sbjct: 57  DSFFEELIQGTDSKVNPGLFGNPINKKVT 85


>At4g16640.1 68417.m02515 matrix metalloproteinase, putative
           metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 364

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 346 EELTDFSTSGLEARRYLGEHGHG 414
           EE+ DF+T+ L+   Y G+HG G
Sbjct: 202 EEVDDFTTADLKIGFYAGDHGDG 224


>At1g10020.1 68414.m01130 expressed protein
          Length = 461

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +3

Query: 336 GTAGGADGLQYERSGSAPLSRRTWAW*AQGVVGIVA*IDIAGTCSRLCKE 485
           G+ GGA      R GS       W W       + A ++  G CS+ C E
Sbjct: 366 GSGGGASPANSPRGGSGDYGYGLWPWNVYKGFVMSASVEGEGKCSKPCVE 415


>At3g55950.1 68416.m06217 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           cytokinin-regulated kinase 1 [Nicotiana tabacum]
           gi|10998537|gb|AAG25966
          Length = 814

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 519 RCLRQSAADQRNPKNRLSRSCSSCKALSC 605
           +C R S +DQ  P N   RS SS    SC
Sbjct: 142 KCWRGSVSDQSKPPNERFRSISSGVGFSC 170


>At2g19390.1 68415.m02262 expressed protein
          Length = 1211

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 248 FNKFFTNEPSAKGSNKSSFTGGRT 177
           FNKFF + P+ K S    F+G R+
Sbjct: 146 FNKFFPSVPTKKRSRPEGFSGDRS 169


>At1g61990.1 68414.m06992 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 414

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 171 TRGPTTSKTRLITSFCTRFVGKKFIKVYY 257
           +RG ++S+   I S   R +GKK I VYY
Sbjct: 129 SRGASSSEITEIVSTVPRILGKKSITVYY 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,119,897
Number of Sequences: 28952
Number of extensions: 263901
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)