Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0269
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_24606| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)                 28   7.2  

>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +3

Query: 354  PADIQDVFIQSQFIRIFLLVAQFNLPECW*L-TLDYIVIVYNI-HLFTE*TFKLFHRRAV 527
            P  +  +++Q+ F  +  LV  F +PECW   T D I   ++I H+F    +    +   
Sbjct: 931  PPALTMLYLQTAFYAVAALVNAFRIPECWAPGTFDLIGRSHHIMHVFVTVAYYYCFQAGY 990

Query: 528  MPSMSKRLHSESLTVPIA 581
            M  + +     +L  P A
Sbjct: 991  MDMVGRAATLATLPQPTA 1008


>SB_24606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 196 FWRVLELFI-ISNYIFNFVVNSEIACGNINLSVST 95
           F R+L+ F  IS+Y  N V+N +   G  N+  ST
Sbjct: 270 FTRILDFFPHISSYFINSVINEKHQSGKTNIEAST 304


>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
          Length = 1383

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 276 FVFNYHSLFLSETILLQSLQNSVKREPADIQDVFIQSQFIRIFLLVAQFNLP 431
           F F+ H+LFLSE  L Q++ +          + F Q   + ++L V     P
Sbjct: 631 FYFDIHALFLSENSLYQAVFDMATYVKTPYSNAFYQLGTLEVWLQVIHSQAP 682


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,583,604
Number of Sequences: 59808
Number of extensions: 357396
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)