Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0269
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 184 LELFIISNYIFNFVVNSEI--ACGNINLSVSTFMFINVFAY 68
           + +F ISN ++NF+++S I   C  I    STF+ + +F +
Sbjct: 190 IRIFYISNLLYNFLISSVIQDRCLYIIQLCSTFLLVFIFIF 230


>Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 184 LELFIISNYIFNFVVNSEI--ACGNINLSVSTFMFINVFAY 68
           + +F ISN ++NF+++S I   C  I    STF+ + +F +
Sbjct: 190 IRIFYISNLLYNFLISSVIQDRCLYIIQLCSTFLLVFIFIF 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,001,606
Number of Sequences: 27780
Number of extensions: 288664
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)