Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0268
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.1  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   2.5  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    26   3.3  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    25   5.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    24   9.9  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    24   9.9  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   9.9  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -3

Query: 272 FLNTMQSFQCVASRFLFFKGFYDLVTKTFSSCLILFIYLFKLYAQNKSCTQADLIPWAFS 93
           FL   QS   ++ +FL   G   L  K  +SC + F+ + KL   + S      +P+ +S
Sbjct: 281 FLTQFQSILNLSDKFLSKTGTLRLQEKLGTSCNLFFVLVLKLALLSSS--YIGFVPYTYS 338


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 329 SQRRPMLSRLDLIINLYLRFLNTMQSFQCVASRFLFFKGF 210
           S R   LS+L+ I+  +L +  T     C+  RFLF K F
Sbjct: 46  SIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFLFNKFF 85


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 363 PPNPPSLQVTCVPTSPHAVQT 301
           PP PP+LQV   P  P   +T
Sbjct: 623 PPEPPTLQVDRTPQQPDPQET 643


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 262 VFKNLKYK-FIIKSSLDSMGRRWDARY 339
           V K L++K ++I SSLD   R WD  Y
Sbjct: 309 VTKILQWKSYLISSSLDQTIRVWDLEY 335


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 92  KRMPMELSPPVYNFCFGHKV 151
           KR+    + PV+  CFGH++
Sbjct: 324 KRVLESKTVPVFGICFGHQI 343


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 317 PMLSRLDLIINLYLRFLNTMQSFQCVASRFLFFKGFYDLVT 195
           P+LS +DLI  LY    +T+ S +  A++      F  + T
Sbjct: 818 PLLSVMDLINLLYTDIFSTISSPRAKAAKMWLISSFCAMKT 858


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 367 SPSQPPFPPGNVRPNVAPCCP 305
           SPS P  P  +V+PN+ P  P
Sbjct: 377 SPSSPSSPALSVKPNIDPQPP 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,262
Number of Sequences: 5004
Number of extensions: 44839
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)