Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0268
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1554 + 34372480-34372587,34372692-34372871,34372985-343730... 31 0.60
12_02_0411 - 18730224-18730574 30 1.1
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 29 1.4
01_05_0013 - 17156017-17157647,17157977-17158144,17160064-171601... 29 1.4
01_06_1384 + 36888265-36889577,36889683-36889908 28 3.2
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 28 4.3
01_06_1107 + 34568091-34568341,34568455-34568540,34569204-345692... 28 4.3
01_05_0776 + 25072541-25073080,25073174-25073418,25073558-250739... 28 4.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 7.4
05_03_0625 - 16325827-16326495 27 7.4
05_03_0617 - 16257281-16257943 27 7.4
02_02_0035 - 6253446-6255473 27 7.4
01_07_0150 + 41508546-41508636,41509384-41510343,41511082-415115... 27 7.4
03_02_0325 - 7467862-7468054,7468668-7468752,7469124-7469290,747... 27 9.8
>04_04_1554 +
34372480-34372587,34372692-34372871,34372985-34373032,
34374061-34374117,34374206-34374307,34374434-34374499,
34374973-34375074,34375116-34375205
Length = 250
Score = 30.7 bits (66), Expect = 0.60
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 376 LNLSPSQPPFPPGNVRPNVAPCCPD 302
L SP++P PPG RP V P PD
Sbjct: 58 LRSSPARPRRPPGPKRPLVGPAAPD 82
>12_02_0411 - 18730224-18730574
Length = 116
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 305 WTAWGDVGTHVTWREGGLGGG 367
W +W ++G WR GG GGG
Sbjct: 41 WVSWSEMGLGNRWRIGGGGGG 61
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 380 LVEPFPLPTPLPSR*RASQRRPMLSRLDLIINLYLRFLNTMQSFQCV 240
L++PFP PTP PS + P++SR D + LR + Q V
Sbjct: 280 LLQPFPPPTPPPSLTPSYNEGPIISR-DKVKEALLRLVQNDQFIDLV 325
>01_05_0013 -
17156017-17157647,17157977-17158144,17160064-17160113,
17160796-17160833,17161102-17161212
Length = 665
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Frame = -1
Query: 355 PPFPPGNVRPNVAPCCP---DW 299
PP+P N R + PCCP DW
Sbjct: 63 PPYPGPNTRTHAFPCCPQKNDW 84
>01_06_1384 + 36888265-36889577,36889683-36889908
Length = 512
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 372 TFPPPNPPSLQVTCVPTSPHAVQTGFNNKF 283
T PPP PP+ V V T HA Q+ + +F
Sbjct: 244 TLPPPQPPAATVAMVDTQ-HAEQSHSHQRF 272
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 380 LVEPFPLPTPLPSR*RASQRRPMLSR 303
L++PFP P P PS A P+LSR
Sbjct: 330 LLQPFPPPNPSPSLASAPVYSPVLSR 355
>01_06_1107 +
34568091-34568341,34568455-34568540,34569204-34569292,
34569406-34569530,34569825-34569901,34570210-34570862
Length = 426
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = -1
Query: 370 LSPSQPPFPPGN---VRPNVAPCCPDW 299
L P QP PPG+ +RP + P C DW
Sbjct: 264 LEPPQPAAPPGSESLLRPKMEP-CDDW 289
>01_05_0776 +
25072541-25073080,25073174-25073418,25073558-25073942,
25074058-25074483
Length = 531
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 373 NLSPSQPPFPPGNVRPNVAPCCPDW 299
++ P PF NVR N PCC W
Sbjct: 89 DIVPRVTPFVHRNVRDNGRPCCFSW 113
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 366 PPPNPPSLQVTCVPTSPHAVQTGFNNKF 283
PPP PPSL VP P G NKF
Sbjct: 638 PPPPPPSLPNRLVPPPP---APGIGNKF 662
>05_03_0625 - 16325827-16326495
Length = 222
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 382 C*LNLSPSQPPFPPGNVRPNVAPCCPDW 299
C LSPS PPF P +R AP W
Sbjct: 29 CSTALSPSSPPFHPTRLRIRWAPPPVGW 56
>05_03_0617 - 16257281-16257943
Length = 220
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 382 C*LNLSPSQPPFPPGNVRPNVAPCCPDW 299
C LSPS PPF P +R AP W
Sbjct: 29 CSTALSPSSPPFHPTRLRIRWAPPPVGW 56
>02_02_0035 - 6253446-6255473
Length = 675
Score = 27.1 bits (57), Expect = 7.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +3
Query: 381 QIMTIKNNTFYFIDNNIYKSHCPP 452
+I +++ T ++DNN++ H PP
Sbjct: 509 EIGNLRSLTILYMDNNLFSGHIPP 532
>01_07_0150 +
41508546-41508636,41509384-41510343,41511082-41511555,
41511642-41511736
Length = 539
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 206 HKIP*KKGIYWPHIEKIALYSKTLNTNLLLNPVWT 310
H++P K + + IAL K ++ NLL VWT
Sbjct: 219 HEVPCKSVVEAEALAVIALLFKLIDLNLLRGTVWT 253
>03_02_0325 -
7467862-7468054,7468668-7468752,7469124-7469290,
7470130-7471133
Length = 482
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 289 IIKSSLDSMGRRWDARYLEGRGVGR 363
+I +SLD G+ WDA + G+ V R
Sbjct: 382 VILASLDGFGKVWDAVEVSGKNVMR 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,875,278
Number of Sequences: 37544
Number of extensions: 311739
Number of successful extensions: 1267
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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