Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0268
         (466 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7571| Best HMM Match : MAM (HMM E-Value=0)                          33   0.12 
SB_50799| Best HMM Match : I-set (HMM E-Value=0)                       28   4.4  
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)                 27   5.8  

>SB_7571| Best HMM Match : MAM (HMM E-Value=0)
          Length = 278

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 200 PGHKIP*KKGIYWPHIEKIALYSKTLNTNLLLNPVWTAWGDVGT 331
           PG+ I     +Y PH + + LY+K     +L NP+WT  G+ GT
Sbjct: 142 PGYCIKFWYHMYGPHTDTLNLYTK--RGGILGNPLWTKTGNQGT 183


>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1195

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 239 PHIEKIALYSKTLNTNLLLNPVWTAWGDVGTHVTWREGGLGGGKVQLTNND 391
           P I  + L   TL     LN    A GD    V W   G G  + +LTN++
Sbjct: 443 PKIANV-LGDTTLQVRGTLNLTCVALGDPAPRVYWVREGAGSSRFKLTNDN 492


>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
          Length = 1199

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 22/53 (41%), Positives = 23/53 (43%)
 Frame = +3

Query: 183 AKGLSYQVIKSLKKKESTGHTLKRLHCIQKPXXXXXXXXXSGQHGATLGRTLP 341
           A G SYQ   SL KK S  H+L  L CI            SG  G    RTLP
Sbjct: 42  ASGWSYQ--PSLPKKHSQSHSLTDLRCID-------DDCNSGCRGFGRSRTLP 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,586,629
Number of Sequences: 59808
Number of extensions: 326734
Number of successful extensions: 1015
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)