Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0268
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034365-2|CAA22257.1|  366|Caenorhabditis elegans Hypothetical ...    31   0.54 
Z70718-9|CAA94678.2|  371|Caenorhabditis elegans Hypothetical pr...    30   0.71 
Z81102-3|CAB03201.2|  189|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z78419-2|CAB01702.1|  154|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine re...    27   5.0  
AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z66561-2|CAA91460.1|  331|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AL034365-2|CAA22257.1|  366|Caenorhabditis elegans Hypothetical
           protein Y69E1A.2 protein.
          Length = 366

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +2

Query: 221 KKGIYWPHIEKIALYSKTLNTNLLLNP-----VWTAWGDVGTHVTWREGGLGGGKVQLTN 385
           ++G  WP  + +    KTL+T   +NP     +W   G+      W EGG         N
Sbjct: 195 REGDAWPTRQLVKALDKTLDTLPGVNPDQYVALWYMQGEPVMGRVWNEGGKVAANFSWFN 254

Query: 386 NDY*K 400
           N+Y K
Sbjct: 255 NEYTK 259


>Z70718-9|CAA94678.2|  371|Caenorhabditis elegans Hypothetical
           protein C04G2.9 protein.
          Length = 371

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +2

Query: 221 KKGIYWPHIEKIALYSKTLNTNLLLNP-----VWTAWGDVGTHVTWREGGLGGGKVQLTN 385
           ++G  WP  + +    KTL+T   +NP     +W   G+      W EGG         N
Sbjct: 200 REGDPWPTRQLVKALDKTLDTLPGVNPDQYVALWYMQGEPVMGRVWNEGGKVAANFSWFN 259

Query: 386 NDY*K 400
           N+Y K
Sbjct: 260 NEYCK 264


>Z81102-3|CAB03201.2|  189|Caenorhabditis elegans Hypothetical
           protein M02B1.2 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 290 INLYLRFLNTMQSFQCVASRFLFFKGFYDLVTKTFSSCLILFIYL 156
           +N Y +F+ T+    C A+ FLF      L++  F + ++LF+++
Sbjct: 46  VNEYPQFVVTLLLIGCYAT-FLFVLSLLGLISLCFLNSILLFVFI 89


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 253 LFNVWPVDSFFL--RDFMTW*LRPLAHALFYLFIYLNFMP 140
           ++N W     FL    F TW   P+     Y +IYL+++P
Sbjct: 79  VYNYWEPLHLFLYGEGFQTWEYSPVYAIRSYFYIYLHYIP 118


>Z78419-2|CAB01702.1|  154|Caenorhabditis elegans Hypothetical
           protein F26A3.2 protein.
          Length = 154

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 325 WDARYLEGRGVGRGK 369
           WDA ++EGR  GRGK
Sbjct: 112 WDAGFIEGRQYGRGK 126


>AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein6 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 239 ASRFLFFKGFYDLVTKTFSSCLILFIYLFKLYAQNKSCTQ 120
           AS F+ +K ++ +++ T  SC  + +YL   Y   K   Q
Sbjct: 187 ASNFVVYKSWFGILSLTLFSCYCMSVYLVLGYKIMKKMNQ 226


>AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical
           protein T13G4.2 protein.
          Length = 154

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 410 KCIIFNSHYLLVEPFPLPTPL 348
           KC+   S++LL+  FP P P+
Sbjct: 132 KCLQLFSNFLLIHSFPFPNPI 152


>Z66561-2|CAA91460.1|  331|Caenorhabditis elegans Hypothetical
           protein F08G12.2 protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 283 KFIIKSSLDSMGRRWDAR-YLEG-RGVG 360
           KFII +S+D   R+WD R ++ G R VG
Sbjct: 220 KFIISNSMDCTVRQWDIRPFVPGQRSVG 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,696,503
Number of Sequences: 27780
Number of extensions: 260381
Number of successful extensions: 838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)