Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0268
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27380.1 68415.m03302 proline-rich family protein contains pr...    27   4.7  
At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /...    27   4.7  
At5g52180.1 68418.m06477 expressed protein                             27   6.2  
At4g31610.1 68417.m04490 transcriptional factor B3 family protei...    27   6.2  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    27   6.2  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    27   6.2  
At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase / x...    27   8.3  
At3g60000.1 68416.m06699 hypothetical protein  contains Pfam pro...    27   8.3  
At1g15840.1 68414.m01901 expressed protein                             27   8.3  

>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 366 PPPNPPSLQVTCVPTSPHAVQTGF 295
           PP  PP +QV   PT+P   Q G+
Sbjct: 721 PPIKPPPVQVPPTPTTPSPPQGGY 744


>At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
           (Glycine max); contains PF00295: Glycosyl hydrolases
           family 28 (polygalacturonases)
          Length = 491

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 366 PPPNPPSLQVTCVPTSPHAVQTGFNNKFVFKVFEYNAI 253
           PPP PP      +P SP       NN  ++ V +Y A+
Sbjct: 61  PPPGPPDSPAPSLPPSPSDDPADDNNG-IYNVRKYGAV 97


>At5g52180.1 68418.m06477 expressed protein
          Length = 458

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 19  YCCLYILLVMHLPCIIYAPPYGRLEENAHGIKS 117
           Y  L+++  + + C +    +G +E+N+HG+ S
Sbjct: 113 YNSLFVISFLAVSCFLLDKYFGIIEDNSHGVLS 145


>At4g31610.1 68417.m04490 transcriptional factor B3 family protein /
           reproductive meristem protein 1 (REM1) similar to
           reproductive meristem gene 1 from [Brassica oleracea
           var. botrytis] GI:3170424; contains Pfam profile
           PF02362: B3 DNA binding domain; identical to cDNA
           reproductive meristem protein 1 (REM1) GI:13604226
          Length = 517

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 304 LDSMGRRWDARYLEGRGVGRGKGS 375
           L+  GR+W + YL+  G+GRG GS
Sbjct: 321 LNQDGRKWSS-YLQITGLGRGAGS 343


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 366 PPPNPPSLQVTCVPTSPHAVQTGFNNKF 283
           P P PP+ +   +P S  A +TGF  KF
Sbjct: 12  PGPWPPTPESAAMPPSSWAKKTGFRPKF 39


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 366 PPPNPPSLQVTCVPTSPHAVQTGFNNKF 283
           P P PP+ +   +P S  A +TGF  KF
Sbjct: 12  PGPWPPTPESAAMPPSSWAKKTGFRPKF 39


>At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (XTR3) identical to endoxyloglucan
           transferase GI:5533317 from [Arabidopsis thaliana]
          Length = 284

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 260 LYSKTLNTNLLLNPVWTAWGDVGTHVTWREGGLGGGKVQLTNND 391
           L++ T++T  L +PV+    D    +TW   G G GKV L N +
Sbjct: 11  LFTLTVSTTTLFSPVFAGTFDTEFDITW---GDGRGKV-LNNGE 50


>At3g60000.1 68416.m06699 hypothetical protein  contains Pfam
           profile: PF04484 family of unknown function (DUF566)
          Length = 451

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 395 NSHYLLVEPFPLPTPLPSR*RASQRR-PMLSRL 300
           NSH L   P P+  P PSR R SQ+R P  +RL
Sbjct: 121 NSHRLET-PTPMVPPPPSRSRLSQQRLPTATRL 152


>At1g15840.1 68414.m01901 expressed protein
          Length = 126

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 306 GQHGATLGRTLP--GGKGGWEGER 371
           G+ G  LGR L   GG+GGW G +
Sbjct: 91  GRRGDGLGRGLGRGGGRGGWNGRK 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,976,757
Number of Sequences: 28952
Number of extensions: 242172
Number of successful extensions: 866
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)