Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0267
         (565 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    23   2.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   5.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.3  

>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 231 CLPRGPCSYQAAPVAYHTSPLRYSSAESGSFQNIVRH 341
           C P G    +  P A HT   + S  +    + I+RH
Sbjct: 56  CTPDGAELKRHLPDALHTECSKCSETQKNGSKKIMRH 92


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
 Frame = +1

Query: 205 PVAYQADPVAYHAAPVATRPPQLP----TTLLHSGTPRLNLARSKTSSV 339
           PV     P  Y+    AT PPQ P    T    S TP   L  S TSSV
Sbjct: 17  PVVLDVIPPHYNIHHGAT-PPQSPNQQYTKDCSSPTPSDKLNTSTTSSV 64


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = +1

Query: 100 SPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLP 276
           SP       S+       L +   +VA+P    A+P   Q+    + A  V   PP  P
Sbjct: 683 SPGALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHP 741


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = +1

Query: 100 SPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLP 276
           SP       S+       L +   +VA+P    A+P   Q+    + A  V   PP  P
Sbjct: 575 SPGALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHP 633


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 192 LPRGPCSVPGRPSCLPRGPCS 254
           L    C VPG  +   R PCS
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCS 210


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 192 LPRGPCSVPGRPSCLPRGPCS 254
           L    C VPG  +   R PCS
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCS 210


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 298 TPRLNLARSKTSSVMTSPR 354
           TPR   AR+ +++ M  PR
Sbjct: 52  TPRWGCARASSATTMGGPR 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,897
Number of Sequences: 336
Number of extensions: 1883
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)