Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0267
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    30   0.27 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   1.4  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   1.9  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   5.8  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +1

Query: 91   VHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHA---APVAYQADPVAYHAAPVATR 261
            V   PA A++ ++  +    Q+ +   A+A PVA  A   APVA  A P A  A  V  +
Sbjct: 860  VSTKPASAITPET--KSTVNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAA-PAKEVVEK 916

Query: 262  PPQLPTTLLHSGTPR 306
             P  P T   S TP+
Sbjct: 917  APSPPATRPKSTTPQ 931


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 19/78 (24%), Positives = 39/78 (50%)
 Frame = +1

Query: 115  VSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPTTLLHS 294
            ++S + +    P   ++ L  +TP+   ++ V   + P+    A + T PP   +T+++S
Sbjct: 1608 ITSSTALNTSTPITSSSVLNSSTPIT--SSTVLNSSTPITSSTA-LNTSPPITSSTVVNS 1664

Query: 295  GTPRLNLARSKTSSVMTS 348
             TP  +     TS+ +TS
Sbjct: 1665 STPITSSTVVNTSTPITS 1682


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +3

Query: 180 YPCSLPRGPCSVPGRPSCLP-----RGPCSYQAAPVAYHTSPLRYSSAE 311
           YP    RGP    GRP  +P      GP   +A P A    P R+++A+
Sbjct: 529 YPGMNARGPVPAQGRPMMMPGSVPSAGPAEAEAVP-AVPGMPERFTAAD 576


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 22/83 (26%), Positives = 31/83 (37%)
 Frame = +1

Query: 55  VAVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVA 234
           V + + G+  AP     A A  S S   H    +   +    +    H  P   QA P  
Sbjct: 133 VFIPQVGMSVAP---PVATAAVSMSYPHHYSASVQQQQATFVSNGQPHNLPA--QAQPAT 187

Query: 235 YHAAPVATRPPQLPTTLLHSGTP 303
            +  P A    Q  TT+  +GTP
Sbjct: 188 IYGIPDALHTTQNGTTIHVTGTP 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,328
Number of Sequences: 5004
Number of extensions: 30350
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)