Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0267
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 34 0.068
10_08_1037 - 22477358-22478752 31 0.48
04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381 31 0.63
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 31 0.63
07_01_0662 + 4972953-4973645,4973758-4974046,4974790-4974803,497... 31 0.84
03_01_0398 + 3092577-3093857 30 1.5
02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139 30 1.5
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 29 3.4
08_02_1098 - 24291138-24291851,24292607-24292861 29 3.4
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475... 29 3.4
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 29 3.4
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461... 28 4.5
09_06_0081 + 20745627-20748144,20748211-20748308 28 4.5
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 28 4.5
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 28 5.9
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 28 5.9
02_04_0518 + 23601355-23602498,23603481-23603779 28 5.9
01_05_0624 + 23772613-23774671,23774737-23775596 28 5.9
01_05_0060 + 17742566-17742826,17744132-17744246,17746818-177469... 28 5.9
11_01_0411 - 3114959-3115000,3115504-3116703 27 7.8
09_02_0258 - 6380702-6380758,6380767-6380794,6381352-6381467,638... 27 7.8
08_02_1436 + 27083698-27084111,27084333-27084416,27084502-270845... 27 7.8
06_03_0868 - 25544933-25544938,25544939-25545142,25545494-255457... 27 7.8
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 27 7.8
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 27 7.8
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 34.3 bits (75), Expect = 0.068
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +1
Query: 64 SKAGLLAAPVHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYH-AAPVAYQADPVAYH 240
S+ G P E S+S+V + + +A +T Y ++PV +P +
Sbjct: 1575 SENGSYCLPQVDCQIEPCYSESVVLSEASTMSSANAMPSTEETYRLSSPVPPPNEPFSNV 1634
Query: 241 AAPVATRPPQLPTTLLHSGTPRLNLARSK 327
+ +PP LP L G PRL +A +K
Sbjct: 1635 SYEDPQKPPPLPPLLWRLGKPRLGIASTK 1663
>10_08_1037 - 22477358-22478752
Length = 464
Score = 31.5 bits (68), Expect = 0.48
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 136 RHDQPQLHA---AKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPTT 282
R PQ HA A A TP A AA + +Q +PV H +P A R LP +
Sbjct: 191 RPQHPQGHATAAAAAAAVTPAAAAAAGLQHQQEPVPRH-SPAAHRGDPLPAS 241
>04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381
Length = 406
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +1
Query: 106 AEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPTT 282
A+AV++Q+ V H A AVA P A + A+ P AYH Q TT
Sbjct: 229 AQAVAAQAGVAHVTASQPGAAQAVAVPAASNPYSSAFTGHPSAYHQGATQAGVYQQGTT 287
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 162 CQARCCYPCSLP-RGPCSVPGRPSCLPRG 245
C C PC LP PC +P P C PRG
Sbjct: 130 CPPPCPPPCPLPCPPPCPLPCPPPCPPRG 158
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Frame = +3
Query: 156 PRCQARCCYPCSLP------RGPCSVPGRPSC-LP-RGPCSYQAAP 269
P C C PCS P RG C P P C LP PC P
Sbjct: 107 PGCPCSCSTPCSFPPIGCHDRGICPPPCPPPCPLPCPPPCPLPCPP 152
>07_01_0662 +
4972953-4973645,4973758-4974046,4974790-4974803,
4974848-4974856
Length = 334
Score = 30.7 bits (66), Expect = 0.84
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Frame = +1
Query: 133 VRHDQPQLHAA------KLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPTTLLHS 294
V HD P HA ++ P + AP+A DP A H + P +PT L
Sbjct: 126 VTHDVPHRHAGWILWTVEVVEVLPESLVPAPIASDDDPAAPHYKTPSRGPSPVPTPALAP 185
Query: 295 GTPRLNLARSKTSSVMTSP 351
+P + S S + P
Sbjct: 186 ASPPRHRPASPPSYLARPP 204
>03_01_0398 + 3092577-3093857
Length = 426
Score = 29.9 bits (64), Expect = 1.5
Identities = 27/89 (30%), Positives = 37/89 (41%)
Frame = +1
Query: 76 LLAAPVHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVA 255
LL P PA A +S + ++ A AVATP ++P A AD Y+ A
Sbjct: 15 LLRRPAAPKPASAAASPLRLPTRAARISCA--AVATPAQSSSSPAAAAADRGVYN---FA 69
Query: 256 TRPPQLPTTLLHSGTPRLNLARSKTSSVM 342
P LP ++L L R S+M
Sbjct: 70 AGPATLPLSVLQRAQAELVDYRGSGMSIM 98
>02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139
Length = 172
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +1
Query: 97 YSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLP 276
Y+ A A ++ H++ AA + AT + YH AP+ + +AP RPP
Sbjct: 78 YNYAAASKGSKVLAHNREAKGAANILGATLLRYHTAPLPRSSTT----SAP---RPPHSS 130
Query: 277 TTLLHSGTPRLNLARSKTSSVMTSP 351
T L L+L ++ + SP
Sbjct: 131 ATTLLCRPRLLHLRADVCAAALASP 155
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 160 AAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLP 276
AA+ TP A AAP A A P + P+ RPP P
Sbjct: 744 AARPRAPTPPAAAAAPAAPPAPPSGLPSWPLLVRPPTGP 782
>08_02_1098 - 24291138-24291851,24292607-24292861
Length = 322
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 168 ARCCYPCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTS 287
A C Y + G + G+ +P G C+Y P +YH S
Sbjct: 219 AACAYSYNRTGG---IAGKKCNIPNGSCNYPTCPKSYHGS 255
>06_03_1282 -
28946363-28946533,28947234-28947272,28947399-28947566,
28947605-28947697,28948135-28948215,28948409-28948499,
28948657-28948728,28948803-28948903,28949283-28949381,
28949631-28949954
Length = 412
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 34 IVVLCALV-AVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQ 153
IV+L A V AV L P HY+P VSS S P+
Sbjct: 15 IVILIAFVCAVGIGAYLYTPQHYTPCYLVSSNSCSSRPPPE 55
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 199 AAPVAYQADPVAYHAAPVATRPPQLPTTLLHS 294
AA A A+ A A PV PPQLP HS
Sbjct: 180 AAAEAIAAESAAALALPVVVPPPQLPVGYAHS 211
>11_03_0146 +
10744403-10744603,10745199-10745834,10745967-10746125,
10746398-10747036,10748018-10748151,10748281-10748464,
10748882-10749217,10751659-10751945,10752863-10753253,
10753351-10753615,10753740-10753818,10754123-10754543
Length = 1243
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +1
Query: 85 APVHYSPA-EAVSSQSIVR---HDQPQ---LHAAKLAVATPVAYHAAPVAYQADPVAYHA 243
AP H SP+ E V VR DQP H+ L +P+ +AP+ + Y A
Sbjct: 443 APTHVSPSMEIVPYIPPVRLEVADQPHPGSAHSPDLTQRSPIPMDSAPLTSEEVSAQYSA 502
Query: 244 APVATRPPQL 273
A PP +
Sbjct: 503 PDTAEEPPAI 512
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +1
Query: 79 LAAPVHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVAT 258
+AAP ++ + + S AA A P+A HA +A PVA P A
Sbjct: 601 VAAPRGWTVSPTTARYSFSDSGASSSSAAPRASTAPLALHAPAPHLRAPPVA-TPPPAAP 659
Query: 259 RPPQLPTTL 285
R +PTT+
Sbjct: 660 RGWTMPTTI 668
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 148 PQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLP 276
P A A P A AAP A A P + PV RPP P
Sbjct: 710 PPAAATPRAPTPPAAAAAAPAAPPALPSGLPSWPVLVRPPTGP 752
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 28.3 bits (60), Expect = 4.5
Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = +1
Query: 100 SPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQL-- 273
SP A + S +PQ A V P Y+A P P H APVA PPQ
Sbjct: 94 SPPVAKGAVSPAVPTRPQ--NAPTPVTPPKEYNAPPPVELTPPAPTHVAPVA--PPQAAV 149
Query: 274 --PTTLLHSGTPRL 309
P +L GTP L
Sbjct: 150 ENPAPVL-PGTPAL 162
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 210 SVPGRPSCLPRGPCSYQAAPVAYHTSPLRYSSAESGSFQ 326
SVPG+PS + P S P+ SP +S +FQ
Sbjct: 352 SVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQ 390
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +3
Query: 129 HCAP*PASAPRCQARC-CYPCSLPRGPCSVPGRPSCLPRGPCS 254
HC P P P C C C G C+ P P C G CS
Sbjct: 120 HCCPEPPPPPPKPKPCECTYCGGHGGGCNKPAVPPC--AGGCS 160
>02_04_0518 + 23601355-23602498,23603481-23603779
Length = 480
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 163 AKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPTTLLHSGTPRLNLARSKT 330
A L A PVA + Q+ PV++ A ++T P+ L SGT +N+ S T
Sbjct: 340 AGLLGACPVATVTSSTPDQSTPVSHSGASIST--PRTAQRLAKSGTWHINMKGSVT 393
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 141 MAHNALGRNGFSGRVVHGSSQKSSFRHRDQSTQYYD 34
+ H L R GF GRV H S+ + D +++ YD
Sbjct: 159 LTHLNLARMGFYGRVPHQLGNLSNLQFLDITSEIYD 194
>01_05_0060 +
17742566-17742826,17744132-17744246,17746818-17746993,
17747323-17747418,17747504-17747782
Length = 308
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 189 SLPRGPCSVPGRPSC--LPRGPCSYQAAPVA 275
+LP PCS PS L PC ++AAP A
Sbjct: 3 ALPASPCSSSSSPSSLFLAPNPCCWKAAPRA 33
>11_01_0411 - 3114959-3115000,3115504-3116703
Length = 413
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 85 APVHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRP 264
AP + P+ +V S S+ H P HA+ L +P A AP + +HA+ V +
Sbjct: 281 APPLWLPSPSVPS-SLALH-VPLFHASSLERWSPTALAMAPPSLPLRVPFFHASSVEEKT 338
Query: 265 PQLPT 279
P T
Sbjct: 339 PAAST 343
>09_02_0258 -
6380702-6380758,6380767-6380794,6381352-6381467,
6382318-6382435,6382542-6382721,6383214-6383313,
6384315-6384618
Length = 300
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 148 PQLHAAKLAVATPVAYHA-APVAYQADPVAYHAAPVATRPPQLPTTLLHSG 297
P AA +V+ V+ AP A A+P AAP PP+ LL G
Sbjct: 41 PAAAAAARSVSVSVSTAVDAPTAAAAEPARGDAAPAPAAPPRRRLILLRHG 91
>08_02_1436 +
27083698-27084111,27084333-27084416,27084502-27084551,
27084676-27084724,27085471-27085545,27085724-27085837
Length = 261
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSY 257
P + P+G S PGRP P P +
Sbjct: 224 PLAFPKGLTSAPGRPRVAPSSPVMF 248
>06_03_0868 -
25544933-25544938,25544939-25545142,25545494-25545751,
25546625-25546906
Length = 249
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 165 QARCCYPCSLPRGPCSVPGRPSCLPRGPCSYQAAP 269
QA P + PR P P RPS PR AP
Sbjct: 2 QALLLSPAAAPRPPLPAPRRPSLPPRATSILTPAP 36
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +1
Query: 178 ATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPTTLLHSGTPRLNLARSKTSSV 339
ATPVA A QA V AP + +PP T + TP + S + V
Sbjct: 98 ATPVASVARTPPPQAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADV 151
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 219 GRPSCLPRGPCS-YQAAPVAYHTSPLRYS 302
GRPS P GPCS + P + + SP R+S
Sbjct: 1395 GRPSDPPPGPCSGWSMPPRSSNYSPSRHS 1423
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,334
Number of Sequences: 37544
Number of extensions: 257158
Number of successful extensions: 1009
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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