Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0267
(565 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 39 0.002
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 32 0.37
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.49
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031) 31 0.49
SB_46911| Best HMM Match : MSSP (HMM E-Value=4.4) 31 0.86
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 31 0.86
SB_40220| Best HMM Match : RTP801_C (HMM E-Value=2.4) 31 0.86
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2) 31 0.86
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 30 1.1
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09) 30 1.1
SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 30 1.5
SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_33073| Best HMM Match : Protamine_P1 (HMM E-Value=1.5) 30 1.5
SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 29 2.6
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_48810| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_25560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 28 4.6
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 28 6.1
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 28 6.1
SB_13048| Best HMM Match : Fork_head (HMM E-Value=0) 28 6.1
SB_23501| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_3877| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 27 8.0
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0) 27 8.0
SB_6222| Best HMM Match : zf-C2H2 (HMM E-Value=7.6) 27 8.0
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +1
Query: 88 PVHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPP 267
P+ Y+P+ V + V QP A + PV YH AP+ P+ YH PV P
Sbjct: 435 PLVYTPSPDVFANPPVIVPQP----AVIVQRPPVVYHQAPLVVHKPPIVYHRPPVVMPAP 490
Query: 268 QLPTTLLHSGTP--RLNLARSKTSSV 339
+ H G + +A++K V
Sbjct: 491 IYHMPVYHHGYAFGKAKIAKTKLKKV 516
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQP-QLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATR-- 261
+++ P E IV H P LH P+ YH PV V YH P+
Sbjct: 1523 IYHPPPEVYHRPDIVVHRAPIVLHRP------PIIYHQPPVIVHRPAVVYHQPPIVFHQP 1576
Query: 262 PPQLPTTLLHS 294
PP + +LHS
Sbjct: 1577 PPAVHQPVLHS 1587
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATR--P 264
+++ P E IV H P L P+ YH PV V YH P+ P
Sbjct: 27 IYHPPPEVYHRPEIVVHRAPIL-----IHRPPIVYHQPPVVVHRPAVVYHQPPIVFHQPP 81
Query: 265 PQLPTTLLHS 294
P + +L+S
Sbjct: 82 PAVNQPMLYS 91
Score = 31.9 bits (69), Expect = 0.37
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +1
Query: 139 HDQPQL--HAAKLAVATP-VAYHAAPVAYQADPVAYHAAPVATR--PPQLPTTLLHS 294
+D+P + H L V P + YH V P+ YH PV PP + +LHS
Sbjct: 711 YDRPDVVVHRPDLVVHRPSIVYHQPSVVVHRPPIIYHQPPVMFHQPPPLVHQPVLHS 767
Score = 31.5 bits (68), Expect = 0.49
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 154 LHAAKLAVATP-VAYHAAPVAYQADPVAYHAAPVATR--PPQLPTTLLHS 294
LH + + P V H APV V YH PV PP + ++HS
Sbjct: 1376 LHRPDIVIHRPSVVLHQAPVVVHRPAVVYHQPPVVVHQPPPLVHQPIIHS 1425
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = +1
Query: 139 HDQPQL--HAAKLAVATP-VAYHAAPVAYQADPVAYHAAPVATR--PPQLPTTLLHS 294
+D+P + H + P V YH V P+ YH PV PP + ++HS
Sbjct: 552 YDRPDVVVHQPDYVIHRPSVVYHQPSVVVHRPPIVYHQPPVVFHQPPPMVRQPVMHS 608
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +1
Query: 139 HDQPQL--HAAKLAVATP-VAYHAAPVAYQADPVAYHAAPVATRPP 267
+D+P + H L P + YH A V P+ YH PV P
Sbjct: 253 YDRPDVIVHRPDLVYHQPSIVYHQASVVIHRPPIVYHQPPVVFHQP 298
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +1
Query: 184 PVAYHAAPVAYQADPVAYHAAPVAT-RPPQL---PTTLLH 291
P+ YH P Y + H AP+ RPP + P ++H
Sbjct: 1521 PIIYHPPPEVYHRPDIVVHRAPIVLHRPPIIYHQPPVIVH 1560
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 184 PVAYHAAPVAYQADPVAYHAAPVAT-RPP 267
P+ YH P Y + H AP+ RPP
Sbjct: 25 PIIYHPPPEVYHRPEIVVHRAPILIHRPP 53
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +1
Query: 139 HDQPQL--HAAKLAVATP-VAYHAAPVAYQADPVAYHAAPVATRPP 267
+D+P + H L P + YH V P+ YH+ PV P
Sbjct: 1069 YDRPNVIVHRPDLVYHQPSIVYHQPSVVVHRPPIIYHSPPVVFHQP 1114
>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +3
Query: 156 PRCQAR--CCY---PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PRC C Y PC PC RP C PC Y P Y P RY+
Sbjct: 183 PRCYTLRPCRYMLRPCRYMLRPCRYMLRPCCYTLRPCRYMLRPCRYTLRPCRYT 236
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRY 299
PC PC RP C PC Y P Y P RY
Sbjct: 169 PCRYTLRPCRYTLRPRCYTLRPCRYMLRPCRYMLRPCRY 207
Score = 34.7 bits (76), Expect = 0.053
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Frame = +3
Query: 174 CCY---PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYSSAESG 317
CCY PC PC RP PC Y P Y P RY+ G
Sbjct: 212 CCYTLRPCRYMLRPCRYTLRPCRYTLRPCRYTLRPCRYTLRPCRYTLRPCG 262
Score = 31.5 bits (68), Expect = 0.49
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P RY+
Sbjct: 260 PCGYTLRPCGYTLRPHRYTLRPCRYTLRPCRYTLRPCRYT 299
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P RY+
Sbjct: 239 PCRYTLRPCRYTLRPCRYTLRPCGYTLRPCGYTLRPHRYT 278
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP C PC Y Y P Y+
Sbjct: 386 PCRYTLSPCRYTLRPRCCTLRPCRYTLRTCRYALRPRHYT 425
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRY 299
PC PC RP PC Y+ P Y P RY
Sbjct: 449 PCRYMLRPCRYTLRPCRYMLRPCRYRLRPCGYTLRPCRY 487
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P RY+
Sbjct: 211 PCCYTLRPCRYMLRPCRYTLRPCRYTLRPCRYTLRPCRYT 250
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P RY+
Sbjct: 246 PCRYTLRPCRYTLRPCGYTLRPCGYTLRPHRYTLRPCRYT 285
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P RY+
Sbjct: 456 PCRYTLRPCRYMLRPCRYRLRPCGYTLRPCRYMLRPCRYT 495
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P RY+
Sbjct: 463 PCRYMLRPCRYRLRPCGYTLRPCRYMLRPCRYTLRPCRYT 502
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P RY+
Sbjct: 204 PCRYMLRPCCYTLRPCRYMLRPCRYTLRPCRYTLRPCRYT 243
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P RY+
Sbjct: 281 PCRYTLRPCRYTLRPCRYTLRPCRYTLRPRRYTLRPCRYT 320
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRY 299
PC PC RP PC Y P Y P RY
Sbjct: 435 PCRYTLRPCRYMLRPCRYMLRPCRYTLRPCRYMLRPCRY 473
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P R++
Sbjct: 470 PCRYRLRPCGYTLRPCRYMLRPCRYTLRPCRYTLRPCRFT 509
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYSSAESG 317
PC PC RP PC Y P Y P Y+ G
Sbjct: 225 PCRYTLRPCRYTLRPCRYTLRPCRYTLRPCRYTLRPCGYTLRPCG 269
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P Y+
Sbjct: 232 PCRYTLRPCRYTLRPCRYTLRPCRYTLRPCGYTLRPCGYT 271
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P Y+
Sbjct: 442 PCRYMLRPCRYMLRPCRYTLRPCRYMLRPCRYRLRPCGYT 481
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
PC PC RP PC Y P Y P Y+
Sbjct: 295 PCRYTLRPCRYTLRPRRYTLRPCRYTLRPCRYTLRPCGYT 334
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 31.9 bits (69), Expect = 0.37
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 120 FPKHCAP*PASAPRCQARCC-YPCSLPRGPCSVPGRPSCLPRGPCSYQA-APVAYHTSPL 293
+P PA P A+ YP P P VPG P+ +P P A + V Y +SP
Sbjct: 875 YPAQAPGYPAQVPGYPAQVPGYPAQAPGCPAQVPGYPAQVPGYPAQVPAGSSVQYVSSPQ 934
Query: 294 RY 299
++
Sbjct: 935 QF 936
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +3
Query: 144 PASAPRCQARCC-YPCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYSSAES 314
PA AP A+ YP +P P VPG P+ P P P P + + S
Sbjct: 869 PAQAPGYPAQAPGYPAQVPGYPAQVPGYPAQAPGCPAQVPGYPAQVPGYPAQVPAGSS 926
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +3
Query: 123 PKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
P+ C+ + C ++C C P G + R C+ G CS + + Y +R S
Sbjct: 770 PRDCSNMNSDPNACNSKCVDGCFCPEG--KIQDRGKCVDPGQCSCYHSGIPYAHGAIRKS 827
Query: 303 SAES 314
S
Sbjct: 828 ECSS 831
>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
Length = 1099
Score = 31.5 bits (68), Expect = 0.49
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 130 IVRHDQPQL-HAAKLAV-ATPVAYHAAPVAYQADPVAYHAAPVATRPPQL 273
I+ H P++ H + V P+ H AP+ Y PV H + P+L
Sbjct: 465 IIYHPPPEIFHRPDIVVHRAPLMVHRAPIIYHQPPVIVHRPAIVYHQPEL 514
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATR--P 264
+++ P E IV H P + P+ YH PV V YH P+ P
Sbjct: 150 IYHPPPEIYHRPDIVVHRPPLV-----IHRPPIIYHQPPVIVHRPAVVYHQPPIIFHQPP 204
Query: 265 PQLPTTLLHS 294
P + LL S
Sbjct: 205 PAVSQPLLFS 214
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = +1
Query: 127 SIVRHDQPQLH--AAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQL----PTTLL 288
S+V H P ++ ++ + H AP+ P+ YH PV P + P+ +
Sbjct: 673 SVVIHRPPIIYHPPPEIYHRPDIIVHRAPIVLYRAPIIYHQPPVVVHRPAIVYHQPSIVF 732
Query: 289 HSGTPRLN 312
H P +N
Sbjct: 733 HQPPPVVN 740
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQP-QLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPP 267
+++ P E IV H P +H A P+ YH PV + YH + P
Sbjct: 307 IYHPPPEIYHRPDIVVHRAPIMIHRA------PIIYHQPPVVVHRPAIVYHQPSIVFHQP 360
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Frame = +1
Query: 187 VAYHAAPVAYQADPVAYHAAPVATRPPQL----PTTLLHSGTP 303
+ H AP+ P+ YH PV P + P+ + H P
Sbjct: 320 IVVHRAPIMIHRAPIIYHQPPVVVHRPAIVYHQPSIVFHQPPP 362
>SB_46911| Best HMM Match : MSSP (HMM E-Value=4.4)
Length = 424
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 195 PRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYSSAESGSFQ 326
P GPC+ S P GPC++Q ++ + L + SFQ
Sbjct: 86 PTGPCASHVIISTTPTGPCAFQLIIISTNRHTLLSRDCQDSSFQ 129
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 30.7 bits (66), Expect = 0.86
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +3
Query: 144 PASAPRCQARCC--YPCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYSSAES- 314
P+ AP CC YP P P + P +P+ PR P + AAP +P +S +
Sbjct: 507 PSCAPTYSPSCCGSYPAPQPPSPPAPPPKPAPPPRSPPA--AAPCNPAMAPQGCNSMQQP 564
Query: 315 GSFQ 326
G +Q
Sbjct: 565 GMYQ 568
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 156 PRC-QARCCYPCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYSSAESGSFQNI 332
P C Q RCC ++P+GP P P + + P AP+ +P+ A + Q
Sbjct: 441 PICIQHRCCN-ANMPQGPPPPPPPPPQMYQQPLMMPQAPMMMPQAPMMMPQAPM-TMQQQ 498
Query: 333 VRHDQP 350
+ QP
Sbjct: 499 AQMQQP 504
>SB_40220| Best HMM Match : RTP801_C (HMM E-Value=2.4)
Length = 230
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 109 EAVSSQSIVRHDQPQLHAAKLAVATPVAYH 198
EA I+R D+ L AAK+A+ +P+ YH
Sbjct: 114 EARELLDIIRKDETSLAAAKIAIKSPMLYH 143
>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
Length = 356
Score = 30.7 bits (66), Expect = 0.86
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQP-QLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATR-- 261
+++ P E IV H P LH + YH PV + YH P+
Sbjct: 158 IYHPPPEVYHRPDIVVHRAPIMLHRPA------IIYHQPPVVVHRPAIIYHQPPIVFHQP 211
Query: 262 PPQLPTTLLHS 294
PP + +LHS
Sbjct: 212 PPVVNQPILHS 222
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +1
Query: 184 PVAYHAAPVAYQADPVAYHAAPVATRPPQL 273
P+ YH P Y + H AP+ P +
Sbjct: 156 PIIYHPPPEVYHRPDIVVHRAPIMLHRPAI 185
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 30.3 bits (65), Expect = 1.1
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +1
Query: 64 SKAGLLAAPVH-YSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYH 240
S G AAP ++P+ +++ + V A A PV AAP A P A
Sbjct: 69 SNTGTAAAPAQAFAPSAPLAAPAQVA----AAPAPAAAAPAPVPAAAAPAPAPAAPSAAA 124
Query: 241 A-APVATRPPQLPTTLLHSGTPRLNLARSKTSSVMTS 348
A APV + P P++ + S TP + + SSV +S
Sbjct: 125 APAPVRSVPSTSPSS-VRSATPYYPQTQQQQSSVSSS 160
>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
Length = 133
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = +3
Query: 123 PKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSPLRYS 302
P+ C+ + C ++C C P G + R C+ G CS + + Y +R +
Sbjct: 71 PRDCSNMNSDPNACNSKCVDGCFCPEG--KIQDRGKCVDPGQCSCYHSGIPYAHGAIRKT 128
Query: 303 SAES 314
S
Sbjct: 129 ECSS 132
>SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 584
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 178 ATPVAYHAAPVAYQADPVAYHAAP 249
A P YHA P Y P YHA P
Sbjct: 275 AVPHGYHAVPHGYHEVPHGYHAVP 298
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 184 PVAYHAAPVAYQADPVAYHAAP 249
P YH P Y A P YHA P
Sbjct: 263 PRGYHEVPYGYHAVPHGYHAVP 284
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 184 PVAYHAAPVAYQADPVAYHAAP 249
P YHA P Y A P YH P
Sbjct: 270 PYGYHAVPHGYHAVPHGYHEVP 291
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 169 LAVATPVAYHAAPVAYQADPVAYHAAP 249
L +A P YH P Y P YHA P
Sbjct: 370 LYLAAPHGYHEMPHGYHEVPHGYHAVP 396
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 175 VATPVAYHAAPVAYQADPVAYHAAP 249
+A P YH P Y P YHA P
Sbjct: 323 LAAPHGYHEMPHGYHEVPHGYHAVP 347
>SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSP--LRYSSAESGSFQNIVRHDQPQT 356
P ++ PC+V P + PC+ Q +P SP +++S V+H P T
Sbjct: 103 PYTVQHSPCTVQHSPYTVQHSPCTVQHSPYTVQHSPYTVQHSPYAVQHSPYTVQH-SPYT 161
Query: 357 IQY 365
+Q+
Sbjct: 162 VQH 164
>SB_33073| Best HMM Match : Protamine_P1 (HMM E-Value=1.5)
Length = 537
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQPQLHAAKLAVA-TPVAYHAAPVAYQADPVAYHAAPVATRP 264
V Y P + VR+ + +AV P+A P A + P+A P+ATRP
Sbjct: 72 VRYRPIAVRYRPTAVRYRPIAVRYRPIAVRHRPIAVRYRPTAVRYRPIAVRYRPIATRP 130
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQPQLHAAKLAVA-TPVAYHAAPVAYQADPVAYHAAPVATRP 264
V Y P VR+ + +AV P+A P+A + P+A P+ATRP
Sbjct: 140 VRYRPIAVRYRPIAVRYRPIAVRYRPIAVRYRPIAVRHRPIAVRHRPIAVRHRPIATRP 198
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQPQLHAAKLAVA-TPVAYHAAPVAYQADPVAYHAAPVATR 261
V Y P VR+ + +AV P+A P+A + P+A+ P+A R
Sbjct: 264 VRYRPIAVRCRPIAVRYRPIAVRCRPIAVRYRPIAVRYRPIAVRYRPIAWRYRPIAVR 321
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQPQLHAAKLAVA-TPVAYHAAPVAYQADPVAYHAAPVATR 261
V Y P VR+ + +AV P+A P+A + P+A+ P+A R
Sbjct: 376 VRYRPIAVRCRPIAVRYRPIAVRCRPIAVRYRPIAVRYRPIAVRYRPIAWRYRPIAVR 433
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQPQLHAAKLAVA-TPVAYHAAPVAYQADPVAYHAAPVATR 261
V Y P S VR+ + +AV P+A P+A + P+A P+A R
Sbjct: 453 VRYRPIAVRYRPSAVRYRPIAVRYRPIAVRYRPIAVRYRPIAVRYRPIAVRYRPIAVR 510
>SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +3
Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAYHTSP-LRYSSAESGSFQNIVRHDQP 350
P S PCS P PCS P+ HT P L ++ G + + H +P
Sbjct: 34 PRSATLAPCSATLAPCSATLAPCSALTCPMLGHTRPTLGHTRPTLGHTRPTLGHTRP 90
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 29.1 bits (62), Expect = 2.6
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVR-HDQPQLHAAKLAVATPVAYHA--APVAYQADPVAYHAA----P 249
VH+SP + + + R H P+ A TP H+ PV P +H+ P
Sbjct: 560 VHHSPRTPLPAYTSPRVHHSPRTPVP--AYTTPRVLHSPRTPVPAYTSPRVHHSPRTPLP 617
Query: 250 VATRPP--QLPTTLLHSGTPRLNLARSKTSSVMTSPR 354
T P P T L + +PR L + T V SPR
Sbjct: 618 AYTSPRVHHSPRTPLPAYSPRTTLPANTTPRVHHSPR 654
>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 100 SPAE--AVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQL 273
+PAE AV + ++ A A P A AAP A A P A AAP AT +
Sbjct: 13 APAETTAVPAGNMTAAPMETTAAPDATTAAPDATTAAPEATTAAPEATTAAPEATTAAPV 72
Query: 274 PTT 282
TT
Sbjct: 73 ETT 75
>SB_48810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 75 TSGCSRALLSR*SRFFPK-HCAP*PASAPRCQARCCYPCS 191
TS SRA L F P HCA S PRC AR P S
Sbjct: 18 TSPLSRAALRAYKAFHPVLHCALYKCSTPRCIARYTSPPS 57
>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.3 bits (60), Expect = 4.6
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = +3
Query: 12 DPQHVLQNRSTVCFGRGVESWTSGCSRALLSR*SRFFPKHCAP*PASAPRCQARCCYPCS 191
DP+ V+ NR+ R + S CSR + RF+ H AP P R ++ P +
Sbjct: 267 DPEDVIVNRNP----RSPLTVGSKCSRGTYIQRYRFYKSHSAPVPPETRRKRSLPGTP-N 321
Query: 192 LPRGPCSVPGRP 227
P GP RP
Sbjct: 322 TPLGPHGRSVRP 333
>SB_25560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 241 AAPVATRPPQLPTTLLHSGTPRLNLARSKTSSVMTSPR 354
+AP TRPP LP +L G P R +SS+++ R
Sbjct: 63 SAPGVTRPPSLPLSL---GIPSCCFVRCHSSSLLSESR 97
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 147 ASAPRCQARCCY--PCSLPRGPCSVPGRPSCLPRGPC 251
AS + A C Y PCS G CSV G +C PC
Sbjct: 2 ASCLQVTATCSYGNPCS-NGGSCSVDGSETCSNSNPC 37
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 27.9 bits (59), Expect = 6.1
Identities = 23/53 (43%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Frame = +1
Query: 145 QPQLHAAKLAVATPVAYHAAPV---AYQADPVAYHAAPVA----TRPPQLPTT 282
+ L AA A TP A AAPV A A PV AAP A T P P T
Sbjct: 35 EASLTAASAAPVTPTAAPAAPVTPTAAPAAPVTPTAAPAARVTPTAAPAAPVT 87
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +1
Query: 160 AAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPT 279
AA A TP A AAPV A P A A P PT
Sbjct: 50 AAPAAPVTPTAAPAAPVTPTAAPAARVTPTAAPAAPVTPT 89
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 27.9 bits (59), Expect = 6.1
Identities = 23/53 (43%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Frame = +1
Query: 145 QPQLHAAKLAVATPVAYHAAPV---AYQADPVAYHAAPVA----TRPPQLPTT 282
+ L AA A TP A AAPV A A PV AAP A T P P T
Sbjct: 192 EASLTAASAAPVTPTAAPAAPVTPTAAPAAPVTPTAAPAARVTPTAAPAAPVT 244
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +1
Query: 160 AAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPT 279
AA A TP A AAPV A P A A P PT
Sbjct: 207 AAPAAPVTPTAAPAAPVTPTAAPAARVTPTAAPAAPVTPT 246
>SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 311
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 154 LHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPTTL 285
L+A ++ V Y + P A P + H P + PPQLP +L
Sbjct: 190 LYATTYPISAYVPYFSPPHAIPRPP-SLHRDPPPSLPPQLPLSL 232
>SB_23501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Frame = +3
Query: 132 CAP*PASAPRCQARC-CYPCSLPRGPCSVPGRPSCLPRGPCSYQAAPVAY 278
C P +CQ Y C +G P R SC CS P +Y
Sbjct: 127 CQTNPCGGAQCQNTLGSYYCGCAQGNILAPNRRSCQDINECSMGINPCSY 176
>SB_3877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = +3
Query: 180 YPCSLPRGPCSVPGRPSCLPRGPCS--YQAAPVAYHTSPLRYS 302
+ C LP C +P CLP C Y + Y+ L Y+
Sbjct: 27 HKCGLPYNECGLPYNKCCLPYTNCGLPYNKCGLPYNKCGLPYN 69
>SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -1
Query: 118 KRLQRESSAR-EQPEVQLSTPR-PKHTVLRFWRT 23
KRL+ S AR EQP +STP+ KH V + +T
Sbjct: 203 KRLRTNSQARSEQPVTPISTPKSSKHVVSKVGQT 236
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPP 267
+ + P E ++ + H QP H +A P+A H P+A+ P+A H P+A P
Sbjct: 372 IPHGPHEPMAHIQPMAHIQPMAHIQPMAHIQPMA-HIQPMAH-IQPMA-HIQPMAHIQP 427
>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
Length = 932
Score = 27.5 bits (58), Expect = 8.0
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +1
Query: 58 AVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQAD-PVA 234
A S A + A +P A S+ +I R+ PQ A+K A++T A + AD PV+
Sbjct: 741 ATSTATIPRATNTQAPKTASSANTIPRNTDPQ--ASKTAIST------ATIPRSADAPVS 792
Query: 235 YHAAPVATRPPQLPTTLLHSGTPRLNLARSKTSSVMTS 348
A AT P + + RS + V T+
Sbjct: 793 KQVASTATIPRSSDAQVPKQDASTATIPRSTDTQVSTT 830
>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +1
Query: 175 VATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPTTLLHSGTPRLNLARSKTSSVMTSP 351
+ T P+A D P+AT P T L + TP L ++T+ + T+P
Sbjct: 674 IKTSATTQTPPIASTTDTSTSQTPPIATTPSLTTQTTLIATTPSLT---TQTTLIATTP 729
>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 1381
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 55 VAVSKAGLLAAPVHYSPAEAVSSQS 129
VAV K+ L +P PA AVSSQS
Sbjct: 1081 VAVDKSSWLGSPPFLLPARAVSSQS 1105
>SB_6222| Best HMM Match : zf-C2H2 (HMM E-Value=7.6)
Length = 177
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 91 VHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPP 267
+ + P E ++ + H QP H +A P+A H P+A+ P+A H P+A P
Sbjct: 58 IPHGPHEPMAHIQPMAHIQPMAHIQPMAHIQPMA-HIQPMAH-IQPMA-HIQPMAHIQP 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,939,347
Number of Sequences: 59808
Number of extensions: 265366
Number of successful extensions: 1116
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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