Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0267
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    33   0.13 
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    33   0.13 
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic...    32   0.23 
At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi...    28   3.7  
At1g62780.1 68414.m07086 expressed protein                             28   3.7  
At3g08650.2 68416.m01005 metal transporter family protein contai...    28   5.0  
At3g08650.1 68416.m01004 metal transporter family protein contai...    28   5.0  
At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-proly...    28   5.0  
At1g48500.1 68414.m05421 expressed protein ; expression supporte...    27   6.5  
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o...    27   8.7  

>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 26/89 (29%), Positives = 35/89 (39%)
 Frame = +1

Query: 64  SKAGLLAAPVHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHA 243
           S A   A P     +  V SQ I  H  P    +    A+P A  + P + +A+P     
Sbjct: 168 SSASANAPPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLD- 226

Query: 244 APVATRPPQLPTTLLHSGTPRLNLARSKT 330
                RPP      L +  PRL+ AR  T
Sbjct: 227 ---TPRPPSPRAASLRADPPRLDAARPTT 252


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 26/89 (29%), Positives = 35/89 (39%)
 Frame = +1

Query: 64  SKAGLLAAPVHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHA 243
           S A   A P     +  V SQ I  H  P    +    A+P A  + P + +A+P     
Sbjct: 167 SSASANAPPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLD- 225

Query: 244 APVATRPPQLPTTLLHSGTPRLNLARSKT 330
                RPP      L +  PRL+ AR  T
Sbjct: 226 ---TPRPPSPRAASLRADPPRLDAARPTT 251


>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
           to gi|10880497|gb|AAG24278; supported by Ceres cDNA
           265772
          Length = 127

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
 Frame = +1

Query: 22  MFSKIVVLCALVAVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAY-- 195
           M SK VV+   +A+  +  +A     +P  A +   +    QP   AA     TP     
Sbjct: 1   MASKSVVVLLFLALIASSAIAQ----APGPAPTRSPLPSPAQPPRTAAPTPSITPTPTPT 56

Query: 196 -HAAPVAYQADPVAYHAAPVATRPPQLPTTLLHSGTP 303
             A P A    P A    P +  PP  PT+L   G P
Sbjct: 57  PSATPTAAPVSPPAGSPLPSSASPPAPPTSLTPDGAP 93


>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1403

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 24/65 (36%), Positives = 29/65 (44%)
 Frame = +1

Query: 118 SSQSIVRHDQPQLHAAKLAVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPTTLLHSG 297
           +S + V+ D P   A  +A   P     APV   A PVA  AAPV T P     T + S 
Sbjct: 20  NSTTDVKSDAP---APPVAATVPAT---APVTAAAAPVATAAAPV-TAPDNGTLTAVDSA 72

Query: 298 TPRLN 312
            P  N
Sbjct: 73  VPEAN 77


>At1g62780.1 68414.m07086 expressed protein
          Length = 237

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 142 HGAQCFGKKRLQRESSAREQPEVQLSTPRPKHTVLRFWRTCCGSAA 5
           H A+   K+RL+R+S ARE  + QL   + +   LR  R    +AA
Sbjct: 45  HIARLEFKRRLERDSEAREAFQKQLREEKERRQALRQSRVVPDTAA 90


>At3g08650.2 68416.m01005 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 619

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = +1

Query: 64  SKAGLLAAPVHYSPAEAVSSQSIVRHDQPQLHA----AKLAVATPVAYHAAPVAYQADPV 231
           S+AG L  PV   P   ++ QS++       HA      L VA P AY      +   PV
Sbjct: 443 SRAGSLINPVTNFPTSVITLQSLLACGAVGFHALAEGLALGVAAPNAYGLG--RHMVLPV 500

Query: 232 AYHAAPVAT 258
           + H  P  T
Sbjct: 501 SLHGLPRGT 509


>At3g08650.1 68416.m01004 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 595

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = +1

Query: 64  SKAGLLAAPVHYSPAEAVSSQSIVRHDQPQLHA----AKLAVATPVAYHAAPVAYQADPV 231
           S+AG L  PV   P   ++ QS++       HA      L VA P AY      +   PV
Sbjct: 419 SRAGSLINPVTNFPTSVITLQSLLACGAVGFHALAEGLALGVAAPNAYGLG--RHMVLPV 476

Query: 232 AYHAAPVAT 258
           + H  P  T
Sbjct: 477 SLHGLPRGT 485


>At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein identical to Probable
           FKBP-type peptidyl-prolyl cis-trans isomerase 2,
           chloroplast precursor (Ppiase) (Rotamase)
           (SP:O22870)[Arabidopsis thaliana]; contains Pfam
           PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
          Length = 223

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 183 PCSLPRGPCSVPGRPSCLPRGPCSYQAA 266
           P + P+G  S PGRP   P  P  +  +
Sbjct: 184 PLAFPKGLVSAPGRPRVAPNSPVIFDVS 211


>At1g48500.1 68414.m05421 expressed protein ; expression supported
           by MPSS
          Length = 285

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
 Frame = +1

Query: 19  NMFSKIVVLCALVAVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQLHAAKLAVATPVAYH 198
           N+F+ IV   + + +S++     P   +   A S   +V  D     A  + +      H
Sbjct: 97  NLFTSIVDSSSFMFISRSSSKPLPPQLTIFYAGSV--LVYQDIAPEKAQAIMLLAGNGPH 154

Query: 199 AAPVAY-QADPVAYHAAPVATRPPQLPTTLLHSGTPRLNLARSKTSSVMT 345
           A PV+  +   + +H+ P  T PP +P + L S +  ++  RS  S+ +T
Sbjct: 155 AKPVSQPKPQKLVHHSLPT-TDPPTMPPSFLPSISYIVSETRSSGSNGVT 203


>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
           ozone similarly regulated protein 1 UOS1 [Pisum sativum]
           GI:20339364
          Length = 641

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 172 AVATPVAYHAAPVAYQADPVAYHAAPVATRPPQLPT 279
           AVAT V   AAP   +  P++ +A     +PP  PT
Sbjct: 514 AVATSVTETAAPATSKMRPLSPYAIYADLKPPTSPT 549


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,325,758
Number of Sequences: 28952
Number of extensions: 172953
Number of successful extensions: 538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)