Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0265
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    27   1.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   2.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   3.5  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    25   4.6  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   4.6  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   8.0  
SPAC227.04 |||autophagy C terminal domain family protein|Schizos...    25   8.0  

>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 215 KLIANTLEPVQTLLPPAPERLLNTTFCNCKKG 120
           KLI ++  PVQ + P AP  +L++T     KG
Sbjct: 385 KLILSSEVPVQEIYPTAPSEVLSSTADPAAKG 416


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 254 WLGNQLDPKAWGWKLIANTLEPVQTLLPPAPERLLNTTFCNC 129
           +L ++LD    GW LI+ +L  V  ++  APE  L T   NC
Sbjct: 792 FLDSKLDHS--GWSLISKSLSEVFKIINVAPE--LRTRAANC 829


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 111 CTTPFLAVAKCCVEKSLRCWW 173
           C +  L + K CVEK+   WW
Sbjct: 814 CPSRTLIIDKACVEKTWPYWW 834


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 337 FYYAYFS-RKMCIATYLSKWFF 399
           +YY + S R +  AT++++WFF
Sbjct: 346 YYYEFTSPRTISTATFIARWFF 367


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 108 FCTTPFLAVAKCCVEKSLRCW 170
           + ++ F AV  CC E+S+R W
Sbjct: 181 YYSSGFKAVKLCCSEESVRAW 201


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 475 KNSNSTQQHVITNGVQFLLAMYGAPKKTTCLDKLQYTSFVKNTRNKKQVNLAS 317
           K+S  + ++ + NG +  ++    PKK   LD       V N  NK+ V LAS
Sbjct: 32  KSSLHSSENSLVNGKKATVSSTNVPKKRHALDD------VSNFHNKEGVPLAS 78


>SPAC227.04 |||autophagy C terminal domain family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 40  SMIGP*QCVHAMEQNSPTFLQPHFALHPF 126
           S++ P   +HA  ++SP+F  P F   P+
Sbjct: 57  SLMNPMITMHAWIRDSPSFEVPQFFFQPY 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,843
Number of Sequences: 5004
Number of extensions: 40008
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)