Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0265
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1038 - 25596027-25596393,25596492-25596660,25597283-255973... 32 0.21
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 31 0.49
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349... 31 0.65
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 30 1.1
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 30 1.1
03_01_0012 - 101584-101898,102274-102531,102932-103474 29 1.5
09_04_0395 + 17266560-17266593,17266656-17267199,17267297-172677... 29 2.6
02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319 29 2.6
10_08_0640 + 19512591-19512856,19513428-19513550,19513660-195137... 28 3.5
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116... 28 3.5
01_01_0681 + 5235623-5235873,5235958-5236285,5236786-5236935,523... 28 3.5
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 27 8.0
02_04_0581 - 24068122-24068355,24068693-24068906,24069675-240697... 27 8.0
>12_02_1038 -
25596027-25596393,25596492-25596660,25597283-25597349,
25597617-25597794,25599157-25599228,25599311-25599717,
25600035-25600740,25600829-25600998,25601963-25602022,
25602385-25602435
Length = 748
Score = 32.3 bits (70), Expect = 0.21
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 137 CNCKKGCSAK--CGCRKVGLFCSMACTHCQG 51
C+CKK K C C G+FCS C+ CQG
Sbjct: 479 CSCKKSKCLKLYCECFHAGVFCSEPCS-CQG 508
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 137 CNCKKGCSAK--CGCRKVGLFCSMACTHCQG 51
C+CKK K C C G++CS C+ CQG
Sbjct: 470 CSCKKSKCLKLYCECFAAGVYCSEPCS-CQG 499
>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
25635454-25636293
Length = 1686
Score = 30.7 bits (66), Expect = 0.65
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 65 CMPWNKTVQLFCNHILHYTLSCSCKM 142
C+PW +T+Q C H+ H T+SC ++
Sbjct: 1287 CLPW-QTIQ--CQHVFHSTVSCQVRV 1309
>11_04_0364 -
16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 6 NESSRVGDSTFEHDRALTVCACHGTKQSNFSATTFCTTPFLAVAKCC 146
+E S + D F R L++C H + N + F + L + KCC
Sbjct: 770 SEWSGIVDGGFPRLRTLSICHAHSLRLDNIESFPFRSLITLELDKCC 816
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -2
Query: 137 CNCKKGCSAK--CGCRKVGLFCSMAC 66
CNCK+ K C C + G+ CSM+C
Sbjct: 550 CNCKRSYCVKKYCECFQSGVGCSMSC 575
>03_01_0012 - 101584-101898,102274-102531,102932-103474
Length = 371
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 191 PVQTLLPPAPERLLNTTFCNCKKGCSAKCGCRKV 90
P + LL P+P L TT C KG A C +V
Sbjct: 19 PTRRLLSPSPSASLTTTTVRCSKGEMAVVKCIRV 52
>09_04_0395 +
17266560-17266593,17266656-17267199,17267297-17267766,
17267855-17267990,17268097-17268168,17268228-17268276,
17268292-17268360,17268609-17268680,17268769-17268786
Length = 487
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/78 (23%), Positives = 31/78 (39%)
Frame = -2
Query: 266 PSSSWLGNQLDPKAWGWKLIANTLEPVQTLLPPAPERLLNTTFCNCKKGCSAKCGCRKVG 87
P + W G+ P+ W + T EP+ R+++ N K G S G +
Sbjct: 363 PPADWAGDPCLPQGNSWTGVTCTQEPL--------ARVVSLNLTNFKVGGSISDGIANLT 414
Query: 86 LFCSMACTHCQGPIMLEC 33
S+ C G + ++C
Sbjct: 415 AISSILEKDCSGKVNIDC 432
>02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319
Length = 133
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = -2
Query: 137 CNCKKGCSAKCGCRKVGLFCSMACTHC 57
C C C CG R FC + C C
Sbjct: 33 CRCYHECLPNCGLRNSRSFCKVFCGSC 59
>10_08_0640 +
19512591-19512856,19513428-19513550,19513660-19513729,
19513846-19513956,19514224-19514307,19515205-19515255,
19515844-19515873,19516002-19516064,19516164-19516229,
19516369-19516485,19516579-19516614,19516938-19517057,
19517188-19517358,19517578-19517688
Length = 472
Score = 28.3 bits (60), Expect = 3.5
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = -3
Query: 367 TSFVKNTRNKKQVNLASLPPTSVAAH----QHLFRVYYQ--VQVGLVISWTLKPGVG 215
+ FV N +QVN + PP+ H + LFR+ V V TL PG G
Sbjct: 368 SQFVLNHEELQQVNASDQPPSQSPGHVDSGRKLFRIVVADIVSVSACADLTLPPGAG 424
>08_02_0444 -
17209447-17209491,17210559-17210849,17211655-17211672,
17211798-17211969,17212523-17212630,17212940-17213382
Length = 358
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 149 NTTFCNCKKG-CSAK-CGCRKVGLFCSMACTHCQG 51
+T C CK+ C K C C K +FCS C C G
Sbjct: 259 HTKGCKCKRTECLKKYCECFKASVFCSENC-RCTG 292
>01_01_0681 +
5235623-5235873,5235958-5236285,5236786-5236935,
5237255-5237503,5238581-5238670,5238781-5238966,
5239477-5239598,5242915-5243011
Length = 490
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 242 QLDPKAWGWKLIANTLEPVQTLLPPAPERLLN 147
+L P ++GW ++ TLE V P PE ++
Sbjct: 48 RLPPGSFGWPVVGETLEFVSCAYSPRPEAFVD 79
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -2
Query: 143 TFCNCKKGCSAKCGCRKVGLFCSMAC 66
T C C+ C +C C G C C
Sbjct: 649 TPCGCQSACGKQCPCLTNGTCCEKYC 674
>02_04_0581 -
24068122-24068355,24068693-24068906,24069675-24069755,
24069853-24070024,24070806-24070884,24071384-24071477,
24072065-24072147,24072284-24072401,24072457-24072461
Length = 359
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 143 TFCNCKKGCSAKCGCRKVGLFCSMACTHC 57
T C+ C C CR + + CS C HC
Sbjct: 54 TNCSADSTCKDDCECRGLYMSCSKNC-HC 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,508,397
Number of Sequences: 37544
Number of extensions: 265541
Number of successful extensions: 731
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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