Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0265
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    30   0.77 
Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    29   1.4  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    29   1.4  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    27   5.5  
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti...    27   7.2  
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti...    27   7.2  
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform...    27   7.2  
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform...    27   7.2  
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo...    27   7.2  
U80838-4|AAT48616.1|  648|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -2

Query: 134  NCKKGCSAKCG--CRKVGLFCSMACTH 60
            NC   CSAKCG  C     FC+  C H
Sbjct: 1795 NCGHTCSAKCGESCPPCKAFCTNKCEH 1821


>Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK287.1 protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -2

Query: 146 TTFCNCKKG---CSAK-CGCRKVGLFCSMACTHCQG 51
           T+ C C KG   C  K C CR V  FCS +C  C G
Sbjct: 112 TSGCQCAKGKKQCVKKECACRTVYGFCSASC-KCGG 146


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 179 LLPPAPERLLNTTFCNCKKGCSAKCGCR 96
           LLPP  E+ LN  F   K GC     CR
Sbjct: 512 LLPPLKEKFLNWKFTAKKYGCRGDVSCR 539


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 179 LLPPAPERLLNTTFCNCKKGCSAKCGCR 96
           LLPP  E+ LN  F   K GC     CR
Sbjct: 512 LLPPLKEKFLNWKFTAKKYGCRGDVSCR 539


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 179 LLPPAPERLLNTTFCNCKKGCSAKCGCR 96
           LLPP  E+ LN  F   K GC     CR
Sbjct: 512 LLPPLKEKFLNWKFTAKKYGCRGDVSCR 539


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 257 SWLGNQLDPKAWGWKLIANTLEPVQTLL 174
           SWL   L P A+ W LI   + PV +LL
Sbjct: 605 SWLATCLGPAAYFWTLIWKFVTPVCSLL 632


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
 Frame = -2

Query: 128 KKGCSAKCGCRKVGLF-----CSMACTHCQGPIMLEC 33
           +K CS  CGC    LF     CS +C   Q PI L C
Sbjct: 37  RKRCS--CGCSGCDLFPNRSCCSSSCCSSQKPIPLAC 71


>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform c protein.
          Length = 1211

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 94  KLDCFVPWHAH 62
           +L CFVPWH+H
Sbjct: 556 ELACFVPWHSH 566


>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform a protein.
          Length = 1124

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 94  KLDCFVPWHAH 62
           +L CFVPWH+H
Sbjct: 591 ELACFVPWHSH 601


>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
           protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 94  KLDCFVPWHAH 62
           +L CFVPWH+H
Sbjct: 591 ELACFVPWHSH 601


>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
           protein.
          Length = 1128

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 94  KLDCFVPWHAH 62
           +L CFVPWH+H
Sbjct: 591 ELACFVPWHSH 601


>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
           A protein.
          Length = 1124

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 94  KLDCFVPWHAH 62
           +L CFVPWH+H
Sbjct: 591 ELACFVPWHSH 601


>U80838-4|AAT48616.1|  648|Caenorhabditis elegans Hypothetical
           protein F47F6.5 protein.
          Length = 648

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 382 DKLQYTSFVKNTRNKKQVNLASLPPTSVAAHQHLFRVYYQV 260
           D  Q +  +    +K QV     PPT++A   HL +VY Q+
Sbjct: 241 DTRQGSIMMFKAESKHQVICEYTPPTTMAEMFHLAKVYAQI 281


>AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical
           protein F27B3.7 protein.
          Length = 142

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 74  WNKTVQLFCNHILHYTLSCSCKMLC 148
           W KTV+ F   +++Y++  SC   C
Sbjct: 65  WYKTVEQFRKSLIYYSIFTSCHKKC 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,665,680
Number of Sequences: 27780
Number of extensions: 236424
Number of successful extensions: 693
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)