Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0265
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.99 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.99 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 168 WWK*SLNWL*CIGDQLPTPGFRVQL 242
           WW   L WL  +   L  PG+ + +
Sbjct: 526 WWSHVLGWLCGLSSMLCIPGYMIYI 550


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 168 WWK*SLNWL*CIGDQLPTPGFRVQL 242
           WW   L WL  +   L  PG+ + +
Sbjct: 579 WWSHVLGWLCGLSSMLCIPGYMIYI 603


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 54  LTVCACHGTKQSNFSATTFCTTPFLAVAKCCVEKSLR 164
           ++V  C G   S    +   TT F     CC E  L+
Sbjct: 64  ISVTKCEGFCNSQVQPSVASTTGFSKECYCCRESYLK 100


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 54  LTVCACHGTKQSNFSATTFCTTPFLAVAKCCVEKSLR 164
           ++V  C G   S    +   TT F     CC E  L+
Sbjct: 64  ISVTKCEGFCNSQVQPSVASTTGFSKECYCCRESYLK 100


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 209 IANTLEPVQTLLPPAPERLLNTT 141
           + N LE ++ L+P  PE   +TT
Sbjct: 64  LRNCLEKLKVLVPLGPETSRHTT 86


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 137 CNCKKGCSAKCGC 99
           C+C+  C A C C
Sbjct: 755 CDCEMTCPAGCKC 767


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 386 ASGFFGGSVHSKKKLNSVGD 445
           ASG   G  H K+ LN + D
Sbjct: 14  ASGLVNGGSHEKRLLNDLLD 33


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 370 IATYLSKWFFWGLR 411
           + TYL KW  W L+
Sbjct: 258 VPTYLIKWKNWDLK 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,675
Number of Sequences: 438
Number of extensions: 2553
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)