Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0265
(486 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ... 33 0.13
At4g35080.2 68417.m04981 high-affinity nickel-transport family p... 30 0.72
At4g35080.1 68417.m04980 high-affinity nickel-transport family p... 30 0.72
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc... 29 1.7
At1g73240.1 68414.m08476 expressed protein 29 1.7
At5g24740.1 68418.m02920 expressed protein 28 2.9
At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing ... 28 2.9
At2g16800.1 68415.m01926 high-affinity nickel-transport family p... 28 2.9
At1g66780.1 68414.m07591 MATE efflux family protein contains TIG... 28 3.8
At1g03520.1 68414.m00333 glycosyltransferase family 14 protein /... 28 3.8
At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /... 27 8.9
At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /... 27 8.9
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ... 27 8.9
>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425
Length = 695
Score = 32.7 bits (71), Expect = 0.13
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 137 CNCKKG-CSAK-CGCRKVGLFCSMACTHCQG 51
CNCKK C K C C + G+ CSM C C+G
Sbjct: 489 CNCKKSNCMKKYCECYQGGVGCSMNC-RCEG 518
>At4g35080.2 68417.m04981 high-affinity nickel-transport family
protein contains Pfam domain, PF03824: High-affinity
nickel-transport protein
Length = 336
Score = 30.3 bits (65), Expect = 0.72
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 105 WLQKSWTVLFHG-MHTLSRPDHARMLS 28
WL +WT G +HTLS PDH L+
Sbjct: 140 WLTSAWTGFLAGCLHTLSGPDHLAALA 166
>At4g35080.1 68417.m04980 high-affinity nickel-transport family
protein contains Pfam domain, PF03824: High-affinity
nickel-transport protein
Length = 365
Score = 30.3 bits (65), Expect = 0.72
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 105 WLQKSWTVLFHG-MHTLSRPDHARMLS 28
WL +WT G +HTLS PDH L+
Sbjct: 140 WLTSAWTGFLAGCLHTLSGPDHLAALA 166
>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
polycomb-group protein identical to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 902
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -2
Query: 137 CNCKKGCSAKCGCRKVGLFCSMAC 66
CNCK C +C C G C C
Sbjct: 655 CNCKIACGKECPCLLNGTCCEKYC 678
>At1g73240.1 68414.m08476 expressed protein
Length = 519
Score = 29.1 bits (62), Expect = 1.7
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = -3
Query: 328 NLASLPPTSVAAHQHLFRVYYQVQVGLVISWTLKPGVGS*SPIH*SQFKLYFHQHLRDFS 149
N+ TS+ + F V++ Q+ +S L SP+ QF + H+HL D
Sbjct: 34 NIFLFSTTSIISFLFTFLVFHSSQLLFSVSLALLSSPTPDSPLSPLQFAVGLHRHLSDPE 93
Query: 148 TQHFATARKGVVQNVVAEKLDCF 80
+ A +V V A L F
Sbjct: 94 FRRRARVSSRIVLFVCATSLAGF 116
>At5g24740.1 68418.m02920 expressed protein
Length = 3306
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 146 TTFCNCKKGCSAKCGCRKVGLFCSMACTHCQGPIMLEC*VTN 21
+ + +C+K A CG R+V +F +C G ++ TN
Sbjct: 2149 SVYVSCEKTMDATCGAREVLIFVPFLLYNCTGTPLIVSDCTN 2190
>At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain
Length = 639
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = -2
Query: 137 CNCKKGCSAK--CGCRKVGLFCSMACTHCQ 54
C C+K K C C GLFC C+ CQ
Sbjct: 455 CKCRKSQCLKLYCECFSAGLFCGEPCS-CQ 483
>At2g16800.1 68415.m01926 high-affinity nickel-transport family
protein contains Pfam domain, PF03824: High-affinity
nickel-transport protein
Length = 372
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 102 LQKSWTVLFHG-MHTLSRPDHARMLS 28
L +WT F G +HTLS PDH L+
Sbjct: 154 LTSAWTGFFAGCLHTLSGPDHLAALA 179
>At1g66780.1 68414.m07591 MATE efflux family protein contains
TIGRfam profile: TIGR00797: MATE efflux family protein,
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 485
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 367 TSFVKNTRNKKQVNLASLPPTSVAAHQHLFRVYYQVQVG 251
TS+ +T K+V+ + P +VAA Q+L +V V G
Sbjct: 27 TSYYLSTEMMKKVSFMAAPMVAVAASQYLLQVISIVMAG 65
>At1g03520.1 68414.m00333 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile PF02485: Core-2/I-Branching enzyme
Length = 447
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -2
Query: 224 WGWKLIANTLEPVQTLLPPAPERLLNTTFCNCKKGCSAKCG 102
WGW T+ T +PE +T CN K+ + G
Sbjct: 295 WGWDNFPRTILMYYTNFVSSPEGYFHTVICNSKEFINTAIG 335
>At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 424
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -2
Query: 224 WGWKLIANTLEPVQTLLPPAPERLLNTTFCN 132
WGW + TL T +PE T CN
Sbjct: 273 WGWDNLPRTLLMYYTNFVSSPEGYFQTVICN 303
>At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 424
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -2
Query: 224 WGWKLIANTLEPVQTLLPPAPERLLNTTFCN 132
WGW + TL T +PE T CN
Sbjct: 273 WGWDNLPRTLLMYYTNFVSSPEGYFQTVICN 303
>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 766
Score = 26.6 bits (56), Expect = 8.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 104 GCRKVGLFCSMACTHCQGPIMLEC 33
GC+K+G+ + CT C+ + +C
Sbjct: 615 GCKKIGMRSYLQCTICKFALCYQC 638
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,861,426
Number of Sequences: 28952
Number of extensions: 212886
Number of successful extensions: 581
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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