Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0263
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.5  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   9.5  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.5  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   9.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.5  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    21   9.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.5  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 110 SFLIIHS*KTPFLAAQPV 163
           SFL++H  +T F+AA  +
Sbjct: 179 SFLMVHQGETQFVAANVI 196


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 17  KSRRSPERNWVEPF 58
           KS RS + +WV PF
Sbjct: 907 KSGRSVQLSWVAPF 920



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -1

Query: 388  ANWVPG-PPSSISVATPSGASFSRLWR 311
            A  VPG PP+SI V T    S    W+
Sbjct: 991  AEEVPGGPPTSIRVETNDQHSLVVYWK 1017


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 310 RAIIWKKKHQTASL 351
           R + WKK+H+ AS+
Sbjct: 271 RRMKWKKEHKMASM 284


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 310 RAIIWKKKHQTASL 351
           R + WKK+H+ AS+
Sbjct: 271 RRMKWKKEHKMASM 284


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 477 CSTSPFRQLAYSEE 518
           CS SP R+  Y+E+
Sbjct: 62  CSNSPLRKARYTEK 75


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 310 RAIIWKKKHQTASL 351
           R + WKK+H+ AS+
Sbjct: 271 RRMKWKKEHKMASM 284


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 310 RAIIWKKKHQTASL 351
           R + WKK+H+ AS+
Sbjct: 227 RRMKWKKEHKMASM 240


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 310 RAIIWKKKHQTASL 351
           R + WKK+H+ AS+
Sbjct: 271 RRMKWKKEHKMASM 284


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 310 RAIIWKKKHQTASL 351
           R + WKK+H+ AS+
Sbjct: 59  RRMKWKKEHKMASM 72


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 310 RAIIWKKKHQTASL 351
           R + WKK+H+ AS+
Sbjct: 271 RRMKWKKEHKMASM 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,318
Number of Sequences: 336
Number of extensions: 4033
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)