Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0263
         (688 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me...    29   4.5  
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro...    29   4.5  
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA...    29   4.5  
AE014298-3060|AAF50875.1|  223|Drosophila melanogaster CG11229-P...    29   6.0  
BT025222-1|ABF17913.1|  639|Drosophila melanogaster FI01020p pro...    29   7.9  
AY071592-1|AAL49214.1|  639|Drosophila melanogaster RE64280p pro...    29   7.9  
AE014134-1823|AAN10741.1|  551|Drosophila melanogaster CG5603-PB...    29   7.9  
AE014134-1822|AAN10740.1|  550|Drosophila melanogaster CG5603-PC...    29   7.9  
AE014134-1821|AAN10739.1|  639|Drosophila melanogaster CG5603-PE...    29   7.9  
AE014134-1820|AAN10738.1|  639|Drosophila melanogaster CG5603-PD...    29   7.9  

>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
            D.melanogaster RpII215gene encoding RNA polymerase II,
            largest subunit, completecds. ).
          Length = 1896

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 412  NCNTTHYRANWVPGPPSSISVATPSGASFSRLWRARVTHHGTKWS 278
            NCNT  Y +     PP  +S  TP G SFS    +  +     WS
Sbjct: 1513 NCNTPRYFS-----PPGHVSAMTPGGPSFSPSAASDASGMSPSWS 1552


>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
          Length = 1429

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 412  NCNTTHYRANWVPGPPSSISVATPSGASFSRLWRARVTHHGTKWS 278
            NCNT  Y +     PP  +S  TP G SFS    +  +     WS
Sbjct: 1053 NCNTPRYFS-----PPGHVSAMTPGGPSFSPSAASDASGMSPSWS 1092


>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
            protein.
          Length = 1887

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 412  NCNTTHYRANWVPGPPSSISVATPSGASFSRLWRARVTHHGTKWS 278
            NCNT  Y +     PP  +S  TP G SFS    +  +     WS
Sbjct: 1511 NCNTPRYFS-----PPGHVSAMTPGGPSFSPSAASDASGMSPSWS 1550


>AE014298-3060|AAF50875.1|  223|Drosophila melanogaster CG11229-PA
           protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 415 VNCNTTHYRANWVPGPPSSISVATP 341
           VN + T  R+ W PGPP+SI    P
Sbjct: 192 VNASATASRSFWFPGPPASIIHCMP 216


>BT025222-1|ABF17913.1|  639|Drosophila melanogaster FI01020p
           protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 353 GSDAVWCFFFQIMARKGNPPRYKV 282
           G DA WCFF  +  RKG    Y +
Sbjct: 560 GPDAPWCFFDSMADRKGEQNGYNI 583


>AY071592-1|AAL49214.1|  639|Drosophila melanogaster RE64280p
           protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 353 GSDAVWCFFFQIMARKGNPPRYKV 282
           G DA WCFF  +  RKG    Y +
Sbjct: 560 GPDAPWCFFDSMADRKGEQNGYNI 583


>AE014134-1823|AAN10741.1|  551|Drosophila melanogaster CG5603-PB,
           isoform B protein.
          Length = 551

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 353 GSDAVWCFFFQIMARKGNPPRYKV 282
           G DA WCFF  +  RKG    Y +
Sbjct: 472 GPDAPWCFFDSMADRKGEQNGYNI 495


>AE014134-1822|AAN10740.1|  550|Drosophila melanogaster CG5603-PC,
           isoform C protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 353 GSDAVWCFFFQIMARKGNPPRYKV 282
           G DA WCFF  +  RKG    Y +
Sbjct: 471 GPDAPWCFFDSMADRKGEQNGYNI 494


>AE014134-1821|AAN10739.1|  639|Drosophila melanogaster CG5603-PE,
           isoform E protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 353 GSDAVWCFFFQIMARKGNPPRYKV 282
           G DA WCFF  +  RKG    Y +
Sbjct: 560 GPDAPWCFFDSMADRKGEQNGYNI 583


>AE014134-1820|AAN10738.1|  639|Drosophila melanogaster CG5603-PD,
           isoform D protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 353 GSDAVWCFFFQIMARKGNPPRYKV 282
           G DA WCFF  +  RKG    Y +
Sbjct: 560 GPDAPWCFFDSMADRKGEQNGYNI 583


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,967,594
Number of Sequences: 53049
Number of extensions: 774524
Number of successful extensions: 1613
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)