Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0263
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL032626-28|CAO82072.1| 337|Caenorhabditis elegans Hypothetical... 28 5.4
AL032626-8|CAA21528.1| 335|Caenorhabditis elegans Hypothetical ... 28 5.4
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr... 28 7.2
U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF039719-8|AAO12411.1| 338|Caenorhabditis elegans Mutator prote... 27 9.5
AF039719-7|AAB96748.1| 441|Caenorhabditis elegans Mutator prote... 27 9.5
AC024826-14|AAF60791.1| 332|Caenorhabditis elegans Mrna decappi... 27 9.5
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = -1
Query: 370 PPSSISVATPSGASFSRLWRARVTHHGTKWSSPKVMYCVVQHRKNDRLS 224
P S +S TPS S + L R +T H T +SSP V ND LS
Sbjct: 72 PRSRLSFTTPSSTS-TNLPRTSITSHKTLYSSPAAARVSVS--TNDSLS 117
>AL032626-28|CAO82072.1| 337|Caenorhabditis elegans Hypothetical
protein Y37D8A.9b protein.
Length = 337
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = +1
Query: 28 KPRKKLG*TVPDSFRGVKFRAKMTRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE 207
K ++G V ++G + AK+T + D L C +G N+ + E V E
Sbjct: 4 KKNFEVGENVACIYKGKPYDAKITDIKTNSDGKELY----CVHFKGWNNRYDE-KIPVGE 58
Query: 208 MRRHPLKGDRSFYAELHNTSLLVT 279
+ KG S YAE HN L T
Sbjct: 59 EKDRIFKGTASEYAEKHNAELPTT 82
>AL032626-8|CAA21528.1| 335|Caenorhabditis elegans Hypothetical
protein Y37D8A.9a protein.
Length = 335
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = +1
Query: 28 KPRKKLG*TVPDSFRGVKFRAKMTRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE 207
K ++G V ++G + AK+T + D L C +G N+ + E V E
Sbjct: 4 KKNFEVGENVACIYKGKPYDAKITDIKTNSDGKELY----CVHFKGWNNRYDE-KIPVGE 58
Query: 208 MRRHPLKGDRSFYAELHNTSLLVT 279
+ KG S YAE HN L T
Sbjct: 59 EKDRIFKGTASEYAEKHNAELPTT 82
>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 445 PSHDVVKRRPVNCNTTHYRANWVPGPPSSISVATPS 338
PSH P++ + +N P PPSS TPS
Sbjct: 816 PSHSQCPPPPMDYSNNRRNSNLTPMPPSSTFYQTPS 851
>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 445 PSHDVVKRRPVNCNTTHYRANWVPGPPSSISVATPS 338
PSH P++ + +N P PPSS TPS
Sbjct: 816 PSHSQCPPPPMDYSNNRRNSNLTPMPPSSTFYQTPS 851
>U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical
protein K09E3.7 protein.
Length = 859
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 55 VPDSFRGVKFRAKMTRLAIVPDHPLLKDAIPCRA 156
+P FRG AK +R + HP + ++P ++
Sbjct: 635 IPTQFRGSNMEAKQSRFPVWNQHPAMPLSLPTQS 668
>AF039719-8|AAO12411.1| 338|Caenorhabditis elegans Mutator protein
2, isoform b protein.
Length = 338
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -3
Query: 377 TGPPLEHFGSDAVWCFFFQIMARKGNPP-RYKVVVTKSDV 261
T P E FG WC+ + + K NP + +V T S V
Sbjct: 57 TKQPKEEFGKKMDWCYQLKNIISKNNPTWLFNIVPTGSTV 96
>AF039719-7|AAB96748.1| 441|Caenorhabditis elegans Mutator protein
2, isoform a protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -3
Query: 377 TGPPLEHFGSDAVWCFFFQIMARKGNPP-RYKVVVTKSDV 261
T P E FG WC+ + + K NP + +V T S V
Sbjct: 57 TKQPKEEFGKKMDWCYQLKNIISKNNPTWLFNIVPTGSTV 96
>AC024826-14|AAF60791.1| 332|Caenorhabditis elegans Mrna decapping
enzyme protein 1 protein.
Length = 332
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 452 LALPNLIALQHIPLSPAGV*RRGPHRSPFPT-VAQPEWRMANCKR*YFV 595
LA NL LQ I ++ + + + P + + A+ EW +NC+ +FV
Sbjct: 12 LAAKNLAQLQKIDIAASKILDKMPFAAIYHIDAARKEWNQSNCEGTFFV 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,241,148
Number of Sequences: 27780
Number of extensions: 389545
Number of successful extensions: 845
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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