Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0263
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.89 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.3  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 167 RPRAARQGMASFKSG*SGTMARRVIFALNFTPRNESGTV 51
           +PRA  + +A F +G        V F+    PR+ SG++
Sbjct: 648 QPRAGVETLAQFLTGNMAVTEVTVRFSDTIVPRSRSGSI 686


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 442 SHDVVKRRPVNCNTTHYRANWVPGP 368
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 201 CRNAPSSAERRSFFLC 248
           C N+ S  ER S F C
Sbjct: 363 CNNSSSDKERNSSFKC 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,645
Number of Sequences: 438
Number of extensions: 4614
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)