Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0263
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR...    29   2.9  
At1g27020.1 68414.m03294 expressed protein                             28   6.7  
At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family pr...    27   8.8  

>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 771

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 295 HGTKWSSPKVMYCVVQHRKNDRLSADDGAFRQPPSR 188
           HGT  S+P   +    H +++ ++ DD   RQ PSR
Sbjct: 589 HGTPGSAPVGPFAHPSHLRSEEVAMDDDLKRQNPSR 624


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 442 WENPGVTQLNRLAAHPPFASWRI 510
           WE P  T  N+LA    FA+W +
Sbjct: 163 WEKPTSTDFNQLAKESEFAAWTL 185


>At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain; PMID: 12679534
          Length = 428

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 244 YAELHNTSLLVTTTLYRGGLPLRAIIWKKKHQTASLP 354
           Y+ L NT +   +T+Y   +  R I    KH  ASLP
Sbjct: 388 YSFLFNTKIYEGSTIYASAIANRVIEVVDKHYMASLP 424


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,480,677
Number of Sequences: 28952
Number of extensions: 372777
Number of successful extensions: 800
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)