Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0262
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    28   1.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.3  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   9.9  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   9.9  

>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 362 SFVYKGLNQQYRKKVRYIYITSLLLTI 282
           SF +K +N  Y +K+  IYI SLL ++
Sbjct: 148 SFSFKAMNPWYEEKLTGIYIISLLQSV 174


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 128 IVKFYRYFFYCI-EFTKIEKWCLHCLFVLLIWA 223
           ++KF+ +FFY   E T      L CLF L  +A
Sbjct: 228 LLKFFEFFFYAYTEETDAHLPALQCLFQLCAYA 260


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 192 CIACLFCLFGLGKRGAMAKRC 254
           C  C   ++GL KRG + K C
Sbjct: 411 CSYCREIIWGLSKRGCVCKNC 431


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 238 LWPNGVFIMQSIIKTMVSR 294
           +W N   +MQ IIK+M+SR
Sbjct: 679 VWNNSGKVMQGIIKSMLSR 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,200
Number of Sequences: 5004
Number of extensions: 57777
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)