Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0262
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146     31   1.1  
12_02_0725 - 22545423-22546251,22546352-22546547,22546791-225469...    30   1.5  
01_05_0227 - 19512866-19514983                                         29   3.4  
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106...    29   4.5  
04_04_1310 - 32517074-32517193,32517295-32517360,32517468-325175...    29   4.5  
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    28   5.9  
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689...    28   5.9  
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005...    28   7.8  

>11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146
          Length = 163

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = +3

Query: 372 RLIINTYEIPQRIARTSELNSQSSLVFFRIFSAISEVRPFLLAMSRLV 515
           ++ + T  +P+RI   S  N+++ L++FR+ + + ++ P  L +  LV
Sbjct: 29  KVAVRTGFVPERIGDQSASNTETILIWFRLVTTMFKMPPVRLKVETLV 76


>12_02_0725 -
           22545423-22546251,22546352-22546547,22546791-22546973,
           22547076-22547275,22548030-22548133
          Length = 503

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 161 IEFTKIEKWCLHCLFVLLIWAWEAGS 238
           + F +++  CL  L VLL W WE GS
Sbjct: 58  LRFKQLKLVCLALLVVLLTWKWEKGS 83


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = +1

Query: 547 INKAFTEVQIKTIQHLE-----HMEHFKIRNSLLSLRVEPVTNWPFG 672
           ++K   E+QIK I+H++      M H K +N +  L ++  + W FG
Sbjct: 637 LDKLNGELQIKNIKHVKDPFDAEMVHLKRKNGIRKLSLDWSSRWEFG 683


>06_03_1333 - 29410014-29410052,29410071-29410322,29410601-29410633,
            29411035-29411045,29411420-29415325,29415437-29415920
          Length = 1574

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 293  LLTIVFIIDC--IMNTPFGHSSPLPKPK*AKQTSNANTISQFS*IQCNKKS 147
            LL ++ + DC  +M  PF H +   +P+     +   T+ +   + C K S
Sbjct: 962  LLEVLIVRDCPELMELPFSHPTTCSRPEQGTNLTQFPTLKKLEIVNCQKLS 1012


>04_04_1310 -
           32517074-32517193,32517295-32517360,32517468-32517558,
           32517741-32517870,32517944-32518032,32518300-32518376,
           32518539-32518607,32518800-32518874,32519040-32519135,
           32519232-32519396
          Length = 325

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 443 FGFF-PYLLGNIRSAPFFIGHVTPGL 517
           +GFF PYL+G+I      IG ++PGL
Sbjct: 137 WGFFVPYLIGSISLIVLAIGSISPGL 162


>09_06_0061 +
           20596360-20596618,20597039-20597158,20597329-20597462,
           20597578-20597730,20597816-20597927,20598022-20598352,
           20598524-20598737,20598842-20598931,20599669-20599924,
           20600029-20600141,20600733-20600831,20600915-20600980,
           20601018-20601167,20601278-20601368,20601710-20601749,
           20603888-20605247,20605478-20605507,20605834-20605885,
           20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 234 GAMAKR-CVHYAINNKDYGK*KRGNINISDLLPILLIKAFIHKTAK 368
           GA+A + C  +AI    +GK ++ NIN S+LL   L++ FI    K
Sbjct: 500 GAIADQGCQVWAITLLGFGKSEKPNINYSELLWSELLRDFIVDVVK 545


>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
            6899245-6899386,6899951-6900020,6900077-6900216,
            6900291-6900365,6901083-6904723
          Length = 1448

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 173  KIEKWCLHCLFVLLIWAWEAGSYGQTV 253
            ++ ++C H +FV+++ AWE  S  +T+
Sbjct: 1243 RLHEFCSHSVFVIILPAWEISSVFETL 1269


>02_04_0597 -
           24198112-24198462,24199249-24199389,24200322-24200537,
           24200626-24201561,24201655-24201816,24202026-24202304,
           24202399-24203171,24206142-24207363
          Length = 1359

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 478 SDIAEKIRKKTKEDCEFNSLVLAMRCGIS 392
           SD+A+ + K    DCE +S  L+M C  S
Sbjct: 843 SDVADALLKDIDSDCEPDSSCLSMSCSTS 871


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,345
Number of Sequences: 37544
Number of extensions: 324360
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)