Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0262
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011)                 29   2.6  
SB_15290| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  

>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +1

Query: 538 GLGINKAFTEVQIKTIQHLEHMEHFKIRNSLLSLRVEPVTNWPF 669
           G  I +A++E+Q K+++  E M + K+  S LSL    + NWPF
Sbjct: 361 GETIRQAYSELQQKSLKLFE-MAYKKVHTSPLSLPRSILINWPF 403


>SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011)
          Length = 380

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 386 IYDETSLRSFVYKGLNQQYRKKVRYIY 306
           IY    + +FVY G N ++R+  R IY
Sbjct: 316 IYTNAVINAFVYAGFNSEFRRTFRRIY 342


>SB_15290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 514 TRRDMANKKGRTSDIAEKIRKKTKEDCEFNSLV 416
           T RD+AN+ G+  D+ E + +K++++     LV
Sbjct: 169 TARDIANRSGKWVDLFEAVEEKSRKNSALGGLV 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,890,315
Number of Sequences: 59808
Number of extensions: 402044
Number of successful extensions: 940
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)