Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0262
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    28   5.3  
DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    28   6.9  
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    28   6.9  
U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 315 SDLLPILLIKAFIHKTAKRRLIINTYEIPQRIARTSELN 431
           +D++P+ ++   I  +A  R  INT EIP     + ELN
Sbjct: 274 ADIIPVDIVANMIIASASYRTSINTTEIPVIHCSSGELN 312


>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 290 LTIVFIIDCIMNTPFGHSSPLPKPK*AKQTSNA 192
           + +V+ +  ++  PF H +P+P P  + +T+NA
Sbjct: 1   MRLVYSLIFLLFIPFSHPNPIPIPTISPETTNA 33


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 290 LTIVFIIDCIMNTPFGHSSPLPKPK*AKQTSNA 192
           + +V+ +  ++  PF H +P+P P  + +T+NA
Sbjct: 1   MRLVYSLIFLLFIPFSHPNPIPIPTISPETTNA 33


>U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical
           protein ZK470.1 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 305 ITSLLLTIVFIIDCIMN 255
           IT +L+T++F+ DC+ N
Sbjct: 302 ITCILMTVIFVFDCLTN 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,186,208
Number of Sequences: 27780
Number of extensions: 317569
Number of successful extensions: 769
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)