Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0262
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21960.1 68415.m02609 expressed protein                             29   3.7  
At3g26250.1 68416.m03275 DC1 domain-containing protein contains ...    28   4.9  
At4g13410.1 68417.m02094 glycosyl transferase family 2 protein s...    28   6.5  
At4g14170.1 68417.m02188 pentatricopeptide (PPR) repeat-containi...    27   8.6  

>At2g21960.1 68415.m02609 expressed protein
          Length = 332

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 443 FGFF-PYLLGNIRSAPFFIGHVTPGL 517
           +GFF PYL+G+I      +G V+PGL
Sbjct: 144 WGFFVPYLVGSISLVVLAVGSVSPGL 169


>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 490

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 525 VFCKPGVTWPIKKGALLILPRRYG 454
           ++ KP  +W I +G+LLILP   G
Sbjct: 405 LYLKPRSSWSISRGSLLILPNFMG 428


>At4g13410.1 68417.m02094 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 537

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 122 KLIVKFYRYFFYCI 163
           K++V F+ YFFYC+
Sbjct: 381 KIVVHFFTYFFYCV 394


>At4g14170.1 68417.m02188 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 458

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 505 HAWFTKYCYALGLGINKAFTEVQIK 579
           H W  + C  LGL +  A T++ +K
Sbjct: 239 HGWCIRRCSCLGLNLGNAITDMYVK 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,003,757
Number of Sequences: 28952
Number of extensions: 283658
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)