Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0261
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    94   3e-18
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    40   0.058
UniRef50_UPI0000D5678D Cluster: PREDICTED: similar to CG33087-PC...    35   1.7  
UniRef50_Q4N0D0 Cluster: Putative uncharacterized protein; n=3; ...    34   3.8  
UniRef50_Q2JPR4 Cluster: Transporter, cation:proton antiporter f...    33   5.1  
UniRef50_Q4SST7 Cluster: Chromosome undetermined SCAF14347, whol...    33   6.7  
UniRef50_A3LNB8 Cluster: Hexose transporter of the major facilit...    33   8.8  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 94.3 bits (224), Expect = 3e-18
 Identities = 50/74 (67%), Positives = 51/74 (68%)
 Frame = -1

Query: 666  SRVHPYYLEPLRSSPVRFQRSFLPRTIRAME*APLHGVSRAL*HVLLQTRLVEVLSGRQR 487
            SRVHPYYLEPLRSS VRFQRSFLPRTIR     P             +  L  VLSGRQR
Sbjct: 913  SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQR 972

Query: 486  LGSAPGIAEVHGRR 445
            LGSAPGIAEVHGRR
Sbjct: 973  LGSAPGIAEVHGRR 986



 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -2

Query: 581  LWNELPSTVFPERYDMSFFKRGLWK 507
            LWNELPSTVFPERYDMSFFKRGLW+
Sbjct: 941  LWNELPSTVFPERYDMSFFKRGLWR 965


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 39.9 bits (89), Expect = 0.058
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = -2

Query: 455 MGDGNHSPSGGPYARLPT 402
           MGDGNHSPSG PYA LPT
Sbjct: 1   MGDGNHSPSGRPYASLPT 18


>UniRef50_UPI0000D5678D Cluster: PREDICTED: similar to CG33087-PC;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG33087-PC - Tribolium castaneum
          Length = 1872

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 18/57 (31%), Positives = 22/57 (38%)
 Frame = -3

Query: 646 PGTTAIIPSAFPEIFFATDHPGYGMSSPPRCFPSAMTCPSSNEACGSIKR*AAAWLC 476
           PG   I P   P  F    HP   +       P A TCP +   C + K   A W+C
Sbjct: 727 PGNGTIAPRCIPSKFRCNKHPDCPLGEDESSCPPA-TCPPNQFKCANDKCIPAVWVC 782


>UniRef50_Q4N0D0 Cluster: Putative uncharacterized protein; n=3;
           Theileria parva|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 293

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 563 RGAHSIARMVRGKKDLWKRTGDDRS 637
           +G H+ +++V G  D+WK TGDD +
Sbjct: 94  QGTHTFSKIVTGNTDVWKSTGDDHA 118


>UniRef50_Q2JPR4 Cluster: Transporter, cation:proton antiporter
           family; n=8; Cyanobacteria|Rep: Transporter,
           cation:proton antiporter family - Synechococcus sp.
           (strain JA-2-3B'a(2-13)) (Cyanobacteria
           bacteriumYellowstone B-Prime)
          Length = 226

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 564 GELIP*PGWSVAKKISGNALGMIAVVPGS--MDELYFRWRAVPW*K 695
           G L P  G++ A    G A+G++A+   S  M+ +Y RWRA  W K
Sbjct: 120 GHLTPGGGFA-AGVAGGTAIGLVAITASSTWMEAIYKRWRAAMWEK 164


>UniRef50_Q4SST7 Cluster: Chromosome undetermined SCAF14347, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF14347,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 514

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
 Frame = +2

Query: 446 RRPWTS--------AMPGAEPSRCLPLNTSTSLV*RRTCHSARET--PWR 565
           R+PWTS        AM G+ P+R  P  TS S   RRT  + R T  PWR
Sbjct: 419 RQPWTSSSVCWCWTAMGGSPPARPWPTPTSHSTTTRRTSRTPRPTTRPWR 468


>UniRef50_A3LNB8 Cluster: Hexose transporter of the major
           facilitator superfamily; n=2; Saccharomycetaceae|Rep:
           Hexose transporter of the major facilitator superfamily
           - Pichia stipitis (Yeast)
          Length = 502

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 686 WHRPPPEVEFIHTTWNHCDHPQCV 615
           +H+P P+  + HT W H D  QC+
Sbjct: 53  FHKPGPQPSYKHTFWGHNDFKQCI 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,295,690
Number of Sequences: 1657284
Number of extensions: 16121431
Number of successful extensions: 35514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35498
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)