Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0261
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    26   4.5  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    26   5.9  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    26   5.9  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   7.8  

>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +3

Query: 528 EGHVI-----ALGKHRGGELIP*PGWSVAKKISGNALGMIAVVPGSMDELYF 668
           +GHV+     A+   +G +L+   GWS  K +     GM+  V    ++L F
Sbjct: 133 DGHVVGSSAPAINNGKGKQLLEMMGWSRGKGLGSENQGMVDPVVAVKEKLLF 184


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 637 WFQVVWMNSTSGGGR 681
           +F ++WMN+T+GG R
Sbjct: 378 YFSLLWMNATAGGPR 392


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 359 YRNWINSLVLNQNKILKLCFVVVKLICFTAGSG 261
           +R WI  L+       K+ F  +  ICFT G G
Sbjct: 57  HRAWIIPLIKQAFAEAKISFKDIDCICFTKGPG 89


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 661 SSSILPGTTAIIPSAFP 611
           SSS +PGT++I+P+  P
Sbjct: 317 SSSFVPGTSSIVPTLHP 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,725
Number of Sequences: 5004
Number of extensions: 64243
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)