Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0261
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361...    32   0.38 
03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555           29   2.7  
01_07_0369 - 43111835-43111882,43112172-43112245,43112670-431127...    28   6.2  

>01_06_1357 +
           36632992-36633621,36634003-36635136,36635525-36636193,
           36636250-36636343,36636378-36636490
          Length = 879

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 694 FYHGTARHRK*SSSILPGTTAIIPSAFPE--IFFATDHPGYGMSSPPRCFPSAMTCPSSN 521
           FY  + R R+ + ++      I+PS FP+  I  A  HP        RC P+    P S 
Sbjct: 276 FYQASHRRREPAMAMAASPFLILPSLFPKPTILAARIHPSIFRGRHIRCSPNGAAVPESP 335

Query: 520 E 518
           E
Sbjct: 336 E 336


>03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555
          Length = 614

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 695 FLPWHRPPPEVEFIHTTWNHCDHPQCVSRDLFCHGPSGLWN 573
           F+ WHR P  V ++   W +    + +   LF   P+ +W+
Sbjct: 485 FVWWHRLPRRVNYLKNFWANTTAERALKERLFRADPAEVWS 525


>01_07_0369 -
           43111835-43111882,43112172-43112245,43112670-43112754,
           43112930-43113022,43113099-43113163,43114051-43114142,
           43114240-43114527,43114642-43114706,43115421-43115502,
           43115578-43115669,43116169-43116301,43116380-43116501,
           43116624-43116725,43116853-43116892,43117032-43117103,
           43117241-43117320,43117444-43117818
          Length = 635

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 629 HPQCVSRDLFCHGPSGLWNELPSTVFPERYDMSFF 525
           H Q +S ++   GP+GLW+ +  +++ ++Y  S F
Sbjct: 438 HFQLLSSEMAIGGPAGLWHFIYKSIYLDQYVSSEF 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,132,271
Number of Sequences: 37544
Number of extensions: 474412
Number of successful extensions: 1035
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)