Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0261
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  28   8.3  
SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = -3

Query: 679  ARHRK*SSSILPGTTAIIPSAFPEIFFATDHPGYGMSSPPRCFPSAMTCPSSN--EACGS 506
            AR+R+   SI+P  T I P+   E+   T     GM  PP   P +    S    E    
Sbjct: 2258 ARYRRNVESIIPPYTVITPNILMELHPVTIRNFNGMQFPPS--PDSFESYSWQWAEVTNK 2315

Query: 505  IKR*AAAWLCPWH 467
            +K   A +L P H
Sbjct: 2316 VKLPRALFLSPGH 2328


>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 121 KNVGYVLFLKH*GLQQALPILNKKIKAG*VFKCTL 17
           + V ++LF+     Q A+  +NKK   G   KCT+
Sbjct: 51  RGVAFILFIDRQSAQNAVAAVNKKQMFGRTIKCTI 85


>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -2

Query: 491 SGLALPLALLKSMGDGNHSPSGGPYARLPT 402
           SG+  PLA   S  D  H P GGP A  PT
Sbjct: 33  SGIFSPLASSTSASDSRHRPVGGP-AYSPT 61


>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 684  APPATGSRVHPYYLEPLRSSPVRFQRSFLPRTIRAM 577
            APP  G + + YYL  ++   VR+ R     T R +
Sbjct: 1235 APPKAGPKTYCYYLSTVQQLLVRYPRETTETTTRVL 1270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,101,947
Number of Sequences: 59808
Number of extensions: 515196
Number of successful extensions: 1117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)