Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0261
         (696 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031227-1|AAH31227.2|  452|Homo sapiens WDR88 protein protein.        33   1.3  
BC042558-1|AAH42558.1|  265|Homo sapiens zinc finger, DHHC-type ...    31   5.2  
AL390732-2|CAH73849.1|  265|Homo sapiens zinc finger, DHHC-type ...    31   5.2  
BC084581-1|AAH84581.1|  163|Homo sapiens ZNF703 protein protein.       30   9.1  
BC032534-1|AAH32534.1|  590|Homo sapiens zinc finger protein 703...    30   9.1  
AK024361-1|BAB14897.1|  590|Homo sapiens protein ( Homo sapiens ...    30   9.1  

>BC031227-1|AAH31227.2|  452|Homo sapiens WDR88 protein protein.
          Length = 452

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 613 PEIFFATDHPGYGMSSPPRCFPSA 542
           P +  AT  PG+ M+SPPRC P+A
Sbjct: 14  PGLSAATGGPGFEMASPPRCSPTA 37


>BC042558-1|AAH42558.1|  265|Homo sapiens zinc finger, DHHC-type
           containing 21 protein.
          Length = 265

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 350 WINSLVLNQNK--ILKLCFVVVKLICFTAGSGFQFFYYF 240
           WIN+ V   N    L+LCF    L C+     F  +YYF
Sbjct: 122 WINNCVGEDNHWLFLQLCFYTELLTCYALMFSFCHYYYF 160


>AL390732-2|CAH73849.1|  265|Homo sapiens zinc finger, DHHC-type
           containing 21 protein.
          Length = 265

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 350 WINSLVLNQNK--ILKLCFVVVKLICFTAGSGFQFFYYF 240
           WIN+ V   N    L+LCF    L C+     F  +YYF
Sbjct: 122 WINNCVGEDNHWLFLQLCFYTELLTCYALMFSFCHYYYF 160


>BC084581-1|AAH84581.1|  163|Homo sapiens ZNF703 protein protein.
          Length = 163

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 696 VFTMAPPATGSRVHPYYLEPLRSSPV 619
           V  M    TG  +HP YL+PL S+PV
Sbjct: 52  VLKMLSAHTGHLLHPEYLQPLSSTPV 77


>BC032534-1|AAH32534.1|  590|Homo sapiens zinc finger protein 703
           protein.
          Length = 590

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 696 VFTMAPPATGSRVHPYYLEPLRSSPV 619
           V  M    TG  +HP YL+PL S+PV
Sbjct: 52  VLKMLSAHTGHLLHPEYLQPLSSTPV 77


>AK024361-1|BAB14897.1|  590|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14299 fis, clone PLACE1010310, weakly similar to
           SPIDROIN 2. ).
          Length = 590

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 696 VFTMAPPATGSRVHPYYLEPLRSSPV 619
           V  M    TG  +HP YL+PL S+PV
Sbjct: 52  VLKMLSAHTGHLLHPEYLQPLSSTPV 77


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,289,552
Number of Sequences: 237096
Number of extensions: 2522639
Number of successful extensions: 4578
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4577
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)