Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0261
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 658 SSILPGTTAIIPSAFPEIFFATDHPGYGMSSPPRC 554
           S++LP   A   S      +A +HP Y      RC
Sbjct: 317 STMLPAVFAKTVSCIDPWIYAINHPRYRQELQKRC 351


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 424 PPDGEWLPSPMDFSNARG 477
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 695 FLPWHRPPPEVEFIHTTW 642
           FL W+ PP   + +H  W
Sbjct: 29  FLGWNVPPEYSDLVHPHW 46



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 658 SSILPGTTAIIPSAFPEIFFATDHPGYGMSSPPRC 554
           S++LP   A   S      +A +HP Y      RC
Sbjct: 317 STMLPAVFAKTVSCIDPWIYAINHPRYRQELQKRC 351


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 695 FLPWHRPPPEVEF 657
           F+ WH P PE  F
Sbjct: 260 FINWHEPIPEAYF 272


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +1

Query: 262 PLPAVKQINLTTTKHNFRILF*FKTKLLIQFRYI 363
           P+    +  + T K N      F   +++QFRY+
Sbjct: 38  PINVYTKAYIYTIKSNMAKTLQFDVHMMLQFRYL 71


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 30  NTYPALIFLFSIGR 71
           +TYP +++ FSI R
Sbjct: 237 DTYPMIVYEFSISR 250


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 589 HPGYGMSSPPRCFPSAMTCPSSNEACGS 506
           +PG G SSP    PS+     S  + GS
Sbjct: 83  YPGGGSSSPSPSSPSSFFSSVSPTSLGS 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,434
Number of Sequences: 438
Number of extensions: 4822
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)