Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0261
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13570.1 68418.m01568 MutT/nudix family protein similar to mR...    30   1.3  
At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR...    29   2.9  
At4g33330.1 68417.m04740 glycogenin glucosyltransferase (glycoge...    29   2.9  
At4g13620.1 68417.m02120 AP2 domain-containing transcription fac...    29   3.9  
At4g37000.1 68417.m05242 accelerated cell death 2 (ACD2) identic...    28   5.1  
At3g17860.2 68416.m02277 expressed protein                             28   6.8  
At3g17860.1 68416.m02276 expressed protein                             28   6.8  
At2g40230.1 68415.m04947 transferase family protein similar to t...    27   9.0  

>At5g13570.1 68418.m01568 MutT/nudix family protein similar to
           mRNA-decapping enzyme [Homo sapiens] GI:23268269;
           contains Pfam profile PF00293: NUDIX domain
          Length = 373

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 677 PPPEVEFIHTTWNHCDHPQCVSRDLFCHGPSGL 579
           P  + E    TW+  DH Q  S ++  HG SGL
Sbjct: 198 PLTKKEISEITWHRLDHLQPASNEVITHGVSGL 230


>At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1123

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +2

Query: 482 PSRCLPLN-TSTSLV*RRTCHSARETPWRGAHSIARM----VRGKKDL 610
           P RC+P N    +LV  + C S  E  W G HS+  +    +RG ++L
Sbjct: 594 PLRCMPSNFRPENLVKLQMCESKLEKLWDGVHSLTGLRNMDLRGSENL 641


>At4g33330.1 68417.m04740 glycogenin glucosyltransferase
           (glycogenin)-related similar to glycogenin
           glucosyltransferase (glycogenin-1) (EC 2.4.1.186) from
           Homo sapiens [SP|P46976], Mus musculus [SP|Q9R062],
           Oryctolagus cuniculus [GI:165513]; contains Pfam profile
           PF01501: Glycosyl transferase family 8
          Length = 593

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 695 FLPWHRPPPEVEFIHTTWNHCDHPQCVSRDLFCHGP 588
           F+ WHR P  V F+   W++    + +  +LF   P
Sbjct: 459 FVWWHRLPRRVNFLKNFWSNTTKERNIKNNLFAAEP 494


>At4g13620.1 68417.m02120 AP2 domain-containing transcription
           factor, putative similar to AP2 domain containing
           protein RAP2.4 [Arabidopsis thaliana] GI:2281633;
           contains Pfam profile PF00847: AP2 domain
          Length = 388

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 661 SSSILPGTTAIIPSAFPEIFFATDHPGYGMSSPP 560
           +SSI P   A +P  F E F  + HP +  S PP
Sbjct: 112 TSSIHPSPVASVPWNFLESFPQSQHPDHHPSKPP 145


>At4g37000.1 68417.m05242 accelerated cell death 2 (ACD2) identical
           to accelerated cell death 2 (ACD2) GI:12484129 from
           [Arabidopsis thaliana]
          Length = 319

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 654 PYYLEPLRSSPVRFQRSFLPRT-IRAME 574
           P YL PL S P RF ++  PR   ++ME
Sbjct: 15  PSYLSPLTSKPSRFSKNLRPRAQFQSME 42


>At3g17860.2 68416.m02277 expressed protein
          Length = 339

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 676 RHRK*SSSILPGTTAIIPSAFPEIFFATDHPGYGMSSPPRCFPSA 542
           RHRK  +  LP + + +PS+  +++ +T    Y      R FP++
Sbjct: 46  RHRKSGNYHLPHSGSFMPSSVADVYDSTRKAPYSSVQGVRMFPNS 90


>At3g17860.1 68416.m02276 expressed protein
          Length = 352

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 676 RHRK*SSSILPGTTAIIPSAFPEIFFATDHPGYGMSSPPRCFPSA 542
           RHRK  +  LP + + +PS+  +++ +T    Y      R FP++
Sbjct: 59  RHRKSGNYHLPHSGSFMPSSVADVYDSTRKAPYSSVQGVRMFPNS 103


>At2g40230.1 68415.m04947 transferase family protein similar to
           taxadienol acetyl transferase from Taxus cuspidata
           [gi:6978038]; contains Pfam transferase family domain
           PF002458
          Length = 433

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 362 IYRNWINSLVLNQNKILKLCFVV 294
           ++R+W  SL L  N++LKL F V
Sbjct: 269 VWRSWARSLNLPSNQVLKLLFSV 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,351,433
Number of Sequences: 28952
Number of extensions: 354448
Number of successful extensions: 805
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)