Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0260
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RF69 Cluster: Putative uncharacterized protein PY0484...    34   3.7  
UniRef50_Q0SW62 Cluster: Membrane protein, putative; n=3; Clostr...    33   6.5  
UniRef50_Q06SF2 Cluster: DNA-directed RNA polymerase; n=1; Stige...    33   8.6  
UniRef50_Q4XNB3 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q7RF69 Cluster: Putative uncharacterized protein PY04840;
           n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY04840 - Plasmodium yoelii yoelii
          Length = 446

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 487 LQNEAHA*SSQYDKSLIWM*YNIKSIINLKGVSILGVLIKIKITINSDACHY 642
           L+NEAH+   +Y+ ++    Y+  + + +   S+   ++KIKI I +D C Y
Sbjct: 100 LENEAHSIDMKYENNVY---YHAVNTLKVMKFSLCNKVLKIKIPITNDLCEY 148


>UniRef50_Q0SW62 Cluster: Membrane protein, putative; n=3;
           Clostridium perfringens|Rep: Membrane protein, putative
           - Clostridium perfringens (strain SM101 / Type A)
          Length = 224

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 248 WENEMGFCKNFQYITTILLRIYFISCHVASFNFIPIDS*LKLINFISFCFKLNSIQQNI 72
           WEN +G C  F +++T LL        V  +  I + S     +FI +C KLN  +  +
Sbjct: 19  WENAVGACLLF-FVSTFLLSFLLSPIPVFGWIIIALISTFLTGSFIKYCIKLNETEGKV 76


>UniRef50_Q06SF2 Cluster: DNA-directed RNA polymerase; n=1;
            Stigeoclonium helveticum|Rep: DNA-directed RNA polymerase
            - Stigeoclonium helveticum (Green alga)
          Length = 2430

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 255  ALSQILNGSYPTVIICLNLKKH*RNKIKQFTKLHNSFSTQKFKYILT-FKI*THKE*ETC 431
            +LS+ L  S     IC NLKK   NK+ +F K+    ST  F ++ + FK    K  +  
Sbjct: 1433 SLSETLYKSRFDKKICFNLKKLITNKMPRFIKIPTLLSTIPFAFLKSEFKEQNEKIAQR- 1491

Query: 432  SYDNDKRNKKNSEVIYEMLT 491
              D  K NKK+    ++  T
Sbjct: 1492 KADRQKNNKKSEAFFFKSNT 1511


>UniRef50_Q4XNB3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 1018

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 324 RNKI-KQFTKLHNSFSTQKFKYILTFKI*THKE*ETCSYDNDK-RNKKNSEVI 476
           RN+I KQ  KL +  + ++  Y    K   HK+ E  S+DNDK R KKN  +I
Sbjct: 586 RNRILKQQKKLFDDLNNEQLLY--ASKKRQHKQVEHFSFDNDKMRKKKNENII 636


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,143,699
Number of Sequences: 1657284
Number of extensions: 9553416
Number of successful extensions: 18120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18118
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)