Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0260
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   2.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   5.4  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   7.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   9.4  

>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 218 FQYITTILLRIYFISCHVASFNF 150
           F +IT + + +YF  C  +  NF
Sbjct: 449 FTFITLLTIGLYFQLCEFSRLNF 471


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 576 FQVDNAFDIILHPN*GFIVLR 514
           F +  A D I  PN G++VLR
Sbjct: 638 FNLPPAKDTIAVPNNGYVVLR 658


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -3

Query: 225 QKLSIYNHNFTENLFH 178
           ++  +Y HNF +++F+
Sbjct: 125 RETDVYTHNFVKDIFY 140


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 391 LLSKFKRIRNKKLARMTTIKGIKKTQKLF 477
           +LSK K I NKK      +K I+  +  F
Sbjct: 229 ILSKVKSILNKKCCEKCGLKKIEFCRPTF 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,706
Number of Sequences: 336
Number of extensions: 2850
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)