Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0260
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    26   4.4  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    25   7.7  

>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -1

Query: 431 ASFLFLMRLNFESKYVFKFLG*KRIVKLCELFYFVPLVFLQV*TYN 294
           +S L  + ++ ES  + K +  KR + LC +FY  P++ ++  T+N
Sbjct: 53  SSLLAFVNISPESTRLLKLVDIKRDIVLCRIFYPSPVLSVRF-TWN 97


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 522 VLR*LSMCFIL*AFHK*LLSFFYSFYRCHTSKFLIPYAFKF 400
           ++R ++  F+L AFH    SFF+ F   H  + L   ++K+
Sbjct: 68  IVRDVNYGFLLRAFHANGASFFFIFLYLHIGRGLYYGSYKY 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,221
Number of Sequences: 5004
Number of extensions: 46696
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)