Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0260
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40852| Best HMM Match : SURF6 (HMM E-Value=3.8)                     28   6.1  
SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)                 28   8.1  

>SB_40852| Best HMM Match : SURF6 (HMM E-Value=3.8)
          Length = 296

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 373 KNLNTYLLSKFKRIRNKKLARMTTIKGIKKTQKLFMKCLQNE 498
           K LN  + +K K  R K+   +  +KGI K + L +K +QN+
Sbjct: 17  KLLNNIVAAKLKNEREKERLSLK-LKGISKQEDLHLKNIQNQ 57


>SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)
          Length = 651

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 290 RYYMFKPEETLKEQNKTIHK 349
           R+YM+KP E L+ +NK + K
Sbjct: 240 RFYMYKPFEDLEPENKDVFK 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,367,137
Number of Sequences: 59808
Number of extensions: 281455
Number of successful extensions: 509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)