Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0260
         (683 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2670|AAF49516.1|  127|Drosophila melanogaster CG13070-P...    31   1.1  
BT011043-1|AAR31114.1|   75|Drosophila melanogaster SD09393p pro...    29   5.9  
AE014296-2411|AAF49717.2| 1333|Drosophila melanogaster CG17177-P...    29   7.8  

>AE014296-2670|AAF49516.1|  127|Drosophila melanogaster CG13070-PA
           protein.
          Length = 127

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 275 RFISHRYYMFKPEETLKEQNKTIHKASQFVFNPKI*IHTYFQNLNA*GIRN 427
           +FI     +FKP +  +E NK I    +FV NP   +++ F  L +   +N
Sbjct: 27  QFIEDPAKLFKPNDFFREVNKFIIGVQEFVQNPSSSLYSAFNQLQSNAKKN 77


>BT011043-1|AAR31114.1|   75|Drosophila melanogaster SD09393p
           protein.
          Length = 75

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 308 PEETLKEQNKTIHKASQFVFNPKI*IHTYFQNLN 409
           P+ TL+ +  T H+   F ++PK  I+++F NLN
Sbjct: 15  PKTTLRNRTPTNHQ--HFYYSPKYHIYSFFLNLN 46


>AE014296-2411|AAF49717.2| 1333|Drosophila melanogaster CG17177-PA
           protein.
          Length = 1333

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 355 TIRFQPKNLNTYLLSKFKRIRNKKLARMTTIKGIKKTQKLFMKCLQNEAH 504
           T +  P N+N  +  + K +  K    +  +  +K+TQ  F+K +++  H
Sbjct: 447 TGKINPPNVNNSVQKQVKELERKVYRAVLNLDALKETQYDFIKLMESTKH 496


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,075,099
Number of Sequences: 53049
Number of extensions: 422132
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)