Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0260
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56860-1|AAA98705.2|  194|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U41013-4|AAA82303.2|  329|Caenorhabditis elegans Serpentine rece...    28   5.4  

>U56860-1|AAA98705.2|  194|Caenorhabditis elegans Hypothetical
           protein M6.4 protein.
          Length = 194

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/62 (32%), Positives = 35/62 (56%)
 Frame = +3

Query: 258 LSQILNGSYPTVIICLNLKKH*RNKIKQFTKLHNSFSTQKFKYILTFKI*THKE*ETCSY 437
           +S IL  ++PT+   + LK+H R  + + T+   S+S Q+F    TF++    E ++C  
Sbjct: 23  VSLILLATFPTLSSTMTLKRHYRRPVCEPTQ-SCSYSYQQF----TFELCDCPESKSCPM 77

Query: 438 DN 443
           DN
Sbjct: 78  DN 79


>U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical
           protein AH9.4 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 352 FTIRFQPKNLNTYLLSKFKRIRNKKLARMTTIKGI 456
           FT+      LNTY+L K  R+  K + R  T  G+
Sbjct: 13  FTVPIAGVILNTYVLRKLIRVARKSVVRFETTSGL 47


>U41013-4|AAA82303.2|  329|Caenorhabditis elegans Serpentine
           receptor, class t protein73 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 207 YILKVFAKPHFIFPHLALSQILNGSYPTVII 299
           YIL   +KPHF FP   +  ++N S+ +++I
Sbjct: 96  YILN--SKPHFDFPDYLIGAVMNASWVSMLI 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,506
Number of Sequences: 27780
Number of extensions: 245007
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)