Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0260
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = -1

Query: 245 ENEMGF-----CKNFQYITTILLRIYFISCHVASFNFIPIDS 135
           +NE GF     CKN+ + TT+L    ++ C     N  PI S
Sbjct: 24  DNEFGFSYLLNCKNYDHPTTLLKLKRYLFCEYDP-NVRPISS 64


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 209 ITTILLRIYFISCHVASFNF 150
           I+ + +++Y+ISC   S NF
Sbjct: 179 ISILAIKVYYISCPEISVNF 198


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 347 CELFYFVPLVFLQV 306
           C LF+ +P+VF+ V
Sbjct: 210 CILFFLIPMVFIAV 223


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 349 SFTIRFQPKNLNTYLLSKFKRIRN 420
           S T+R + KN+  Y L+K   I+N
Sbjct: 83  SVTLRQEYKNIKLYGLTKNLEIKN 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,623
Number of Sequences: 438
Number of extensions: 3124
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)