Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0260
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61700.1 68418.m07741 ABC transporter family protein ABC fami...    27   8.8  
At3g17611.2 68416.m02250 rhomboid family protein / zinc finger p...    27   8.8  
At3g17611.1 68416.m02249 rhomboid family protein / zinc finger p...    27   8.8  
At1g41830.1 68414.m04829 multi-copper oxidase type I family prot...    27   8.8  

>At5g61700.1 68418.m07741 ABC transporter family protein ABC family
           transporter, Entamoeba histolytica, EMBL:EH058
          Length = 888

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 19  WLLAMLLLPGFELINF*LIFCCMEFNLKQNEMKFINLSHESIG 147
           W+LAM L PGF L     ++   ++  + N MK+ +LS   +G
Sbjct: 439 WILAMELYPGFSLYRG--LYEFSQYASRGNGMKWQDLSDSGMG 479


>At3g17611.2 68416.m02250 rhomboid family protein / zinc finger
           protein-related contains Pfam profiles PF01694: Rhomboid
           family, PF00641: Zn-finger in Ran binding protein and
           others
          Length = 239

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 526 KSLIWM*YNIKSIINLKGVSILGVLIKIKITINSDACHYSMVIQIKTLNSYS 681
           KSL+ +    ++  N   V   GVL  +K+ +NS A  YS V  I     Y+
Sbjct: 40  KSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLNSQAEDYSSVYGILVPTKYA 91


>At3g17611.1 68416.m02249 rhomboid family protein / zinc finger
           protein-related contains Pfam profiles PF01694: Rhomboid
           family, PF00641: Zn-finger in Ran binding protein and
           others
          Length = 334

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 526 KSLIWM*YNIKSIINLKGVSILGVLIKIKITINSDACHYSMVIQIKTLNSYS 681
           KSL+ +    ++  N   V   GVL  +K+ +NS A  YS V  I     Y+
Sbjct: 135 KSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLNSQAEDYSSVYGILVPTKYA 186


>At1g41830.1 68414.m04829 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 542

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -1

Query: 167 VASFNFIPIDS*LKLINF--ISFCFKLNSI 84
           V S +F+P D+ LKL +F  IS  +K+NSI
Sbjct: 368 VNSVSFVPADTPLKLADFFKISGVYKINSI 397


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,409,737
Number of Sequences: 28952
Number of extensions: 212581
Number of successful extensions: 305
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)