Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0259
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    25   0.59 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.4  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   2.4  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   2.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   5.5  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 296 GLTALHWAADRNAITH 249
           GL   H+AADRN+I H
Sbjct: 16  GLFVPHFAADRNSIVH 31


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
            protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
 Frame = -3

Query: 297  WPHCTTLGC*QKCNYALSAAL---SGGCPIDAVD-EC-GQTALHYAVSCGHVESTKILT 136
            W  C    C +      S+AL   SGG     V   C G T    A  CG VES   +T
Sbjct: 886  WRECDKATCEKLFRMKKSSALRPASGGTTARVVRCVCAGSTGTRRATGCGRVESVAEVT 944


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 281 HWAADRNAITH 249
           H+AADRN+I H
Sbjct: 22  HFAADRNSIVH 32


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 281 HWAADRNAITH 249
           H+AADRN+I H
Sbjct: 22  HFAADRNSIVH 32


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 531 SLASSLGISLRFFQASH 581
           SLA S+G+ L  F A+H
Sbjct: 801 SLAHSVGVFLTIFNAAH 817


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 500 DHIFQQSNIFLLSLFTGHIFKILPGLPFPTS 592
           D++F   N F+    T H  +++ GLP PTS
Sbjct: 227 DNLFH--NGFMQEQSTHHQGQLVVGLPAPTS 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,076
Number of Sequences: 336
Number of extensions: 3674
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)