Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0259
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 58 1e-09
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 43 4e-05
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 37 0.003
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 36 0.007
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 34 0.017
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 33 0.030
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 31 0.16
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 28 1.1
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 27 2.0
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 26 4.5
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 4.5
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 26 4.5
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 6.0
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 25 7.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.9
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 58.0 bits (134), Expect = 1e-09
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = -2
Query: 667 ELSGLFKQGTEGQCNTPKPGWLDGKGRRKWEAWKNLKDMPSEEAKEKYIALLKNM 503
+L LFKQ T G NT KPG LD KG+ KW AW+ LK E+A +YI+ + +
Sbjct: 26 KLYALFKQATVGDNNTEKPGLLDLKGKFKWNAWEELKGKSKEDAASEYISFVDEL 80
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -3
Query: 237 LSGGCPIDAVDECGQTALHYAVSCGHVESTKILTKAGATL-LEDEEGNTPI 88
L G +A DE G T +H AVS GH + KIL + G + + D++G TP+
Sbjct: 24 LDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDGETPL 74
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3
Query: 210 VDECGQTALHYAVSCGHVESTKILTKAGATL 118
+D+ G T+LH+A S GH+E K+L +A A +
Sbjct: 244 IDDDGHTSLHWACSMGHIEMIKLLLRANADI 274
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = -1
Query: 416 EPDLVHNELSLLDAAREDCGERVKELLIKKP---ELKYEKDEDGLTALHWAADRNAI 255
E L E SLLD R+ L P ++ D+DG T+LHWA I
Sbjct: 205 EAPLDKYEESLLDFFLHPEEGRIPSFLYSPPPDFQVNSVIDDDGHTSLHWACSMGHI 261
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -3
Query: 237 LSGGCPIDAVDECGQTALHYAVSCGHVESTKILTKAGA-TLLEDEEGNTPI 88
+S P++ D G T LH+A++ GH + L +AGA TL +D E +T +
Sbjct: 161 ISQRAPLNTSDSYGFTPLHFALAEGHPDVGVELVRAGADTLRKDSENHTAL 211
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -3
Query: 198 GQTALHYAVSCGHVESTKILTKAGATLL--EDEEGNTPIRPGLLILEIKEISWKVLMDPR 25
GQT LHYA G + ++L L+ +D +G TP+ + +I+ + K L+ R
Sbjct: 107 GQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVV--KYLISQR 164
Query: 24 A 22
A
Sbjct: 165 A 165
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 219 IDAVDECGQTALHYAVSCGHVESTKILTKAGATLLE--DEEGNTPI 88
++AVD+ +T LH+A S G V + L K + DE G TP+
Sbjct: 30 LNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAGWTPL 75
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 389 SLLDAAREDCGERVKELLIKK-PELKYEKDEDGLTALHWA 273
SL A E+C E E I+ P D+D T LHWA
Sbjct: 5 SLGKAIEENCPEEYVEQAIQNDPNSLNAVDDDKRTPLHWA 44
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 34.3 bits (75), Expect = 0.017
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -3
Query: 219 IDAVDECGQTALHYAVSCGHVESTKILTKAG 127
I+A +E G TA+H+A GH E K+L +AG
Sbjct: 64 INAQNESGNTAMHWAALNGHAEICKLLLEAG 94
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 33.5 bits (73), Expect = 0.030
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 210 VDECGQTALHYAVSCGHVESTKILTKAGATLL 115
+DE G TALH+A + G++E L +AGA ++
Sbjct: 233 IDEDGHTALHWAAAMGNLEMMHALLQAGANVV 264
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -1
Query: 305 DEDGLTALHWAA 270
DEDG TALHWAA
Sbjct: 234 DEDGHTALHWAA 245
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 31.1 bits (67), Expect = 0.16
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = -3
Query: 252 ALSAALSGGCPIDA-VDECGQTALHYAVSCGHVESTKILTKAGATLLEDE-EGNTPIRPG 79
AL A LS +D +DE G ALH+A + + + L GA L G T +
Sbjct: 338 ALEAKLSDSLDLDVPIDELGHAALHWAAAVAKMPLLQALIHKGANPLRGNLTGETALMRS 397
Query: 78 LLIL-EIKEISWKVLMD 31
+L+ + + S+ L+D
Sbjct: 398 VLVTNHLNQNSFGDLLD 414
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 389 SLLDAAREDCGERVKELLIKKPELKYEKDEDGLTALHWAA 270
SL AA + + VK L+ + DE G TALHWAA
Sbjct: 3 SLFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAA 42
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 219 IDAVDECGQTALHYAVSCGHVESTKILTKAGA 124
++A DE G TALH+A + K L + GA
Sbjct: 27 VNATDEGGATALHWAALNQQIPICKFLLEHGA 58
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 4 GLQEFGGPRIHQHLPRNF 57
GL++ GG ++H PRNF
Sbjct: 430 GLRDLGGQKVHMSRPRNF 447
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 222 PIDAVDECGQTALHYAVSCGHVESTKILTKAGATLLED 109
PI+ VD+ + L A CGH K L + GA D
Sbjct: 78 PINQVDQFDYSPLVLASLCGHEPVVKFLLENGALCERD 115
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 234 SGGCPIDAVDECGQTALHYAVSCGHVESTKILTKAGA 124
+ GC ++ D G T LHYA H + L GA
Sbjct: 883 NAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGA 919
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 183 HYAVSCGHVESTKILTKAGATLLEDEEGNTPI 88
HY +V+S KI+ A L DEEGN P+
Sbjct: 71 HYQTLRANVDSLKIIQIGLA--LSDEEGNAPV 100
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 159 HDHTKLRNAELFDHIHRLHQ*DILHLRLHLVRNCI 263
HD +R+ + D HR+ Q ++++ + R C+
Sbjct: 1818 HDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCL 1852
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 500 DHIFQQSNIFLLSLFTGHIFKILPGL 577
D + Q N+F+ + +GH FK LP +
Sbjct: 357 DKVPQFDNVFVANGDSGHAFKFLPNI 382
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/59 (22%), Positives = 24/59 (40%)
Frame = -1
Query: 530 EIYCFVEKYDPDWSGTPQKTNIDTKETWVAVSSMRYSPEPDLVHNELSLLDAAREDCGE 354
EI C +EK + DW + N + + + + Y E + +L D ++ E
Sbjct: 40 EIVCLLEKGEDDWYLVKRNVNSNDDDEEIGIVPSNYITEAEPSTKMKALYDYTQQSVDE 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,430
Number of Sequences: 5004
Number of extensions: 64662
Number of successful extensions: 202
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -