Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0259
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.91 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.91 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 311 EKDEDGLTALHWAADRNAITH 249
           E+ EDG   LH+ +DR  + H
Sbjct: 124 ERPEDGALILHYYSDRPGLEH 144


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 311 EKDEDGLTALHWAADRNAITH 249
           E+ EDG   LH+ +DR  + H
Sbjct: 124 ERPEDGALILHYYSDRPGLEH 144


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -3

Query: 147  KILTKAGATL----LEDEEGNTPIRPGLLILEIKEISWKVLMD 31
            K+L K+G ++        +GN+PI+  ++  +I + SW+  +D
Sbjct: 883  KVLDKSGRSVQLSWAAPYDGNSPIKRYVIEYKISKGSWETDID 925


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 491 SGTPQKTNIDTKETWVAVSSMRYSPEPDLVH 399
           SG    T ++        +S  YS  PDL+H
Sbjct: 639 SGAKSPTVLEELTHGTLAASTLYSKRPDLLH 669


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 491 SGTPQKTNIDTKETWVAVSSMRYSPEPDLVH 399
           SG    T ++        +S  YS  PDL+H
Sbjct: 639 SGAKSPTVLEELTHGTLAASTLYSKRPDLLH 669


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 491 SGTPQKTNIDTKETWVAVSSMRYSPEPDLVH 399
           SG    T ++        +S  YS  PDL+H
Sbjct: 639 SGAKSPTVLEELTHGTLAASTLYSKRPDLLH 669


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,049
Number of Sequences: 438
Number of extensions: 3860
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)