Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0258
         (599 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3VZZ7 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_Q2CG21 Cluster: Putative Competence protein; n=1; Ocean...    34   2.9  
UniRef50_Q63PW0 Cluster: Putative plasmid conjugal transfer prot...    33   3.9  
UniRef50_Q2SI92 Cluster: Site-specific DNA methylase; n=2; Prote...    33   3.9  
UniRef50_A1WZB8 Cluster: Putative uncharacterized protein precur...    33   3.9  
UniRef50_A0QX11 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_A3LWE0 Cluster: Predicted protein; n=1; Pichia stipitis...    32   9.0  

>UniRef50_Q3VZZ7 Cluster: Putative uncharacterized protein; n=1;
           Frankia sp. EAN1pec|Rep: Putative uncharacterized
           protein - Frankia sp. EAN1pec
          Length = 108

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 21/44 (47%), Positives = 23/44 (52%)
 Frame = -1

Query: 419 GAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETR 288
           G  GTA  GVS+TA   G     HAG A R    RH  NHR+ R
Sbjct: 34  GGAGTAAPGVSATAGLFG-FESEHAGTATR-TTARHGSNHRDDR 75


>UniRef50_Q2CG21 Cluster: Putative Competence protein; n=1;
           Oceanicola granulosus HTCC2516|Rep: Putative Competence
           protein - Oceanicola granulosus HTCC2516
          Length = 792

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 21/48 (43%), Positives = 22/48 (45%)
 Frame = -1

Query: 440 PIGQHDAGAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHR 297
           P GQ +  A G ADRG      A GR  VR    AR   R RH   HR
Sbjct: 513 PAGQRERRAGGRADRGRPGAEPAAGR-RVRRRHLARERRRGRHGAGHR 559


>UniRef50_Q63PW0 Cluster: Putative plasmid conjugal transfer
           protein; n=1; Burkholderia pseudomallei|Rep: Putative
           plasmid conjugal transfer protein - Burkholderia
           pseudomallei (Pseudomonas pseudomallei)
          Length = 476

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = -1

Query: 446 KDPIGQHDAGAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNE 267
           K+ IGQ   G + +A RG S    A G   V  AGD+      R  QN         VN+
Sbjct: 409 KERIGQTTGGRIASAIRGGSHYRDAAGADTVSFAGDSLGAGNVRRQQNPMNDEVAAFVNQ 468

Query: 266 RKQTLIDT 243
            + +  +T
Sbjct: 469 DRSSREET 476


>UniRef50_Q2SI92 Cluster: Site-specific DNA methylase; n=2;
           Proteobacteria|Rep: Site-specific DNA methylase -
           Hahella chejuensis (strain KCTC 2396)
          Length = 555

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -2

Query: 517 STNPGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRK 374
           STN     +PVL  Q  NS  N   TP+G+TT    G+   V+  L K
Sbjct: 336 STNGYALAVPVLTRQFGNSGANNVTTPAGTTTAGGGGKTQLVAAFLAK 383


>UniRef50_A1WZB8 Cluster: Putative uncharacterized protein
           precursor; n=1; Halorhodospira halophila SL1|Rep:
           Putative uncharacterized protein precursor -
           Halorhodospira halophila (strain DSM 244 / SL1)
           (Ectothiorhodospirahalophila (strain DSM 244 / SL1))
          Length = 268

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 434 RWGPLSIQSTVSMLILKDWDATSSRVCRSFEVKDPLHLVPR*VGLDASPVDSLIL 598
           RWG   +  TV  L L  W+ T+SR+    E + P  L P  V     PV  +++
Sbjct: 35  RWGRGVLIGTVVALYLASWEPTASRLLAPLEQRYPALLDPAGVAETQGPVTDIVV 89


>UniRef50_A0QX11 Cluster: Putative uncharacterized protein; n=1;
           Mycobacterium smegmatis str. MC2 155|Rep: Putative
           uncharacterized protein - Mycobacterium smegmatis
           (strain ATCC 700084 / mc(2)155)
          Length = 212

 Score = 32.7 bits (71), Expect = 6.8
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -1

Query: 401 DRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIP 279
           DR V +     GR   RHA    RP R R    HRE R  P
Sbjct: 125 DRAVGAVEAGPGRPVPRHAQRGPRPARERQDDEHREAREPP 165


>UniRef50_A3LWE0 Cluster: Predicted protein; n=1; Pichia
           stipitis|Rep: Predicted protein - Pichia stipitis
           (Yeast)
          Length = 816

 Score = 32.3 bits (70), Expect = 9.0
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -1

Query: 407 TADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNE 267
           TA + V   A+ V    + HA DA  PP   H  NHR+T  + IV+E
Sbjct: 105 TATKEVPLYAKTVTSERLLHAADALPPPVTIHIMNHRQTE-LDIVSE 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,467,878
Number of Sequences: 1657284
Number of extensions: 9144082
Number of successful extensions: 31540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31513
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)