Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0258
         (599 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   1.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.6  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   3.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   3.4  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 343 PACRTPTRPTACAVDETPRSAVPTAPASC 429
           P C+  +   +C V+  P  A+   P  C
Sbjct: 132 PDCKDESDENSCTVETDPNRALDCDPTQC 160


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = +1

Query: 343 PACRTPTRPTACAVDETPRSAVPTAPASC 429
           P C+  +   +C V+  P  A    P  C
Sbjct: 139 PDCKDESDENSCTVETDPNRAPDCDPTQC 167


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 104 HRHSNKCRL*YICIK 60
           H H + CR  YIC++
Sbjct: 172 HAHPDDCRKYYICLE 186


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 104 HRHSNKCRL*YICIK 60
           H H + CR  YIC++
Sbjct: 172 HAHPDDCRKYYICLE 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,391
Number of Sequences: 336
Number of extensions: 2185
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)