Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0258
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0549 + 18696903-18698330 34 0.076
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380... 31 0.70
02_05_0584 - 30135768-30135790,30136104-30136866 30 1.2
05_01_0407 + 3208818-3210218 29 2.2
11_06_0682 - 26253319-26253575,26254009-26254114 29 2.8
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052... 29 3.8
05_05_0392 + 24629528-24630442 29 3.8
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 28 6.6
11_06_0611 + 25461469-25461655,25461670-25462238 27 8.7
11_06_0516 + 24502645-24504507 27 8.7
>10_08_0549 + 18696903-18698330
Length = 475
Score = 34.3 bits (75), Expect = 0.076
Identities = 24/61 (39%), Positives = 31/61 (50%)
Frame = -1
Query: 419 GAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQTLIDTR 240
GAV RG ++ A +V V R +AR PPRP A HRE +P + K T+I
Sbjct: 180 GAVAEMARGGAAAAPSVAPVWGREMLEARSPPRPAFA--HREYDEVP---DTKGTIIPLD 234
Query: 239 D 237
D
Sbjct: 235 D 235
>07_01_0511 +
3806475-3806876,3807914-3808039,3808120-3808193,
3808278-3808347,3808431-3808486,3808578-3808649,
3808678-3808811,3808967-3809030,3809111-3809240,
3809326-3809541,3809629-3809750,3810527-3810701,
3810788-3810878,3811040-3811197,3811330-3811518,
3813257-3813340,3813362-3813536,3815300-3815955,
3816226-3816648,3816752-3816790
Length = 1151
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -1
Query: 395 GVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQTL 252
G + ++ A G G H D+ PP +++HR T + P + +
Sbjct: 800 GAAGSSTATGAAGSNHTADSTVPPSLLSSEHHRSTESDPSAEHERHDI 847
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 349 CRTPTRPTACAVDETPRSAVPTAPASCC 432
C TP D +AVPT PA+CC
Sbjct: 172 CMTPLMSVMPCADYLTNTAVPTPPATCC 199
>05_01_0407 + 3208818-3210218
Length = 466
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -1
Query: 416 AVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRH--AQNHRETRTIP 279
AVG RGV A V V R ARRPP PR A H E +P
Sbjct: 180 AVGEFARGVPG-APTVKPVWARELLSARRPPLPRDVAAPRHPEYEAVP 226
>11_06_0682 - 26253319-26253575,26254009-26254114
Length = 120
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 352 RTPTRPTACAVDETPRSAVPTAPASCCPMGSFVY 453
RT + PT TP S+ PT A+ P GS V+
Sbjct: 48 RTQSMPTTPTTPVTPSSSSPTTTATTTPRGSNVW 81
>07_03_1731 -
29102403-29102720,29103529-29103735,29103937-29105210,
29105298-29105734,29106370-29106764,29106921-29107051,
29109034-29109052
Length = 926
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/81 (27%), Positives = 32/81 (39%)
Frame = -1
Query: 434 GQHDAGAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQT 255
G+ +A +G + S T AV +G + P PR + ET V +
Sbjct: 202 GEQEATILGERQKQNSPTRSAVSNLGRPPRPQSTVPSLPRLTKEILETYPYEDVKDEHLH 261
Query: 254 LIDTRD*EMTDDRSNLCNASR 192
+ D T + LCNASR
Sbjct: 262 QLAQEDTRDTCKITTLCNASR 282
>05_05_0392 + 24629528-24630442
Length = 304
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 422 AGAVGTA--DRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIP 279
+G +G A DRG ++ GR G A + PP PR R TR P
Sbjct: 144 SGELGRARRDRGPAAAVHGAGRPGGGRASPS-PPPPPRREPGERPTRRSP 192
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -1
Query: 434 GQHDAGAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQ 258
G H+ + +G T +A G+V R A + P +++ E RT + + +K+
Sbjct: 110 GHHNVSDESKSHKGSDQTVRASGKVRKREATGQKEKEAPHAHRSYHERRTSGLSSFKKR 168
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 340 SPACRTPTRPTACAVDETPRSAVPTAPASCCPMGS 444
+PAC +P P A ET RSA A A+ P+GS
Sbjct: 98 APACLSPPPPLPRA--ETGRSAASRATAASPPVGS 130
>11_06_0516 + 24502645-24504507
Length = 620
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 386 STAQAVGRVGVRHAGDARRPPRPRH 312
STA A G V R G+ RR P+ RH
Sbjct: 155 STAPATGVVMTRRMGEIRRGPQMRH 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,650,507
Number of Sequences: 37544
Number of extensions: 250992
Number of successful extensions: 828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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