Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0258
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_11877| Best HMM Match : efhand (HMM E-Value=7.8e-07)                29   2.2  
SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)                     28   5.0  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    28   5.0  
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            28   6.6  
SB_57716| Best HMM Match : Phage_fiber_2 (HMM E-Value=4.3)             28   6.6  
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -2

Query: 517 STNPGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASESG 350
           +T+P  SR+P  +        N + TPSG+ T        AV R  R+ SD + SG
Sbjct: 689 TTSPETSRVPADEGARKERNGNGRGTPSGTLTRENRTSDDAVKR-RRERSDVTPSG 743


>SB_11877| Best HMM Match : efhand (HMM E-Value=7.8e-07)
          Length = 390

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 299 RETRTIPIVNERKQTLIDTRD*EMTDDRSNLCN-ASRFDAF 180
           +  R IP+ + R+++++ +   E+ D    LCN A RF AF
Sbjct: 234 KPNRKIPLTSYRRKSVLFSNKQELADLAEELCNSAKRFSAF 274


>SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)
          Length = 1020

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 508 PGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDAS 359
           PG+SR  +L     +  L+ QRTP    TP+    +  V R+   PS AS
Sbjct: 852 PGKSRDFILLGMSVSDKLDPQRTP---RTPLGLKAERTVHRVTLNPSTAS 898


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 332  RPPRPRHAQNHRETRTIPIVNERKQTL 252
            RPPRPR   + R+ R  P ++ R + L
Sbjct: 1828 RPPRPRSGMDRRDERPRPDIDRRDERL 1854


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 463 STLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSD 365
           S L RQ TPS  +TP +S Q +  S   +  SD
Sbjct: 282 SILRRQNTPSDDSTPPKSRQSSQSSHSSKGDSD 314


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 343 PACRTPTRPTACAVDETPRSAVPTAPASCCPMGS 444
           PA  TPT+PT       P +  PT P +  P G+
Sbjct: 98  PATTTPTKPTTTT---PPATTTPTKPTTTTPPGT 128


>SB_57716| Best HMM Match : Phage_fiber_2 (HMM E-Value=4.3)
          Length = 189

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/56 (23%), Positives = 30/56 (53%)
 Frame = -2

Query: 523 ERSTNPGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASE 356
           +R +    S+ P+LK+++  S +    TPS ST+      + A ++ +++  + +E
Sbjct: 103 KRPSTVAESKKPLLKNKNRRSCIAAPVTPSSSTSDNSKDTRLAAAKAMKRSINTAE 158


>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 337 ASPACRTPTRPTACAVDETPRSAVPTAPAS 426
           A+PA   PTR T   + ETP +A+ +APA+
Sbjct: 658 ATPASGPPTR-TPIPLKETPTAALESAPAA 686


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,916,182
Number of Sequences: 59808
Number of extensions: 295697
Number of successful extensions: 923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)